Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00843 ATGACTGTGGAGGCTCATTCGGTTACTTCTGTCGGTGATGATGGTGCCACTGATCGTTTTCCTGTTGGGATGCGTGTTCTTGCTGTTGACGACGACCCTATTTGTCTCAAAGTGCTTGAAACTCTCCTCCGTAGATGCCAATACCATGTTACCACGACGAAGCAGTCCATTGAGGCTTTGAAAATGTTGAGAGAAAATAGAAACAATTTTGACTTGGTTATCAGTGATGTGAACATGCCTGATATGGATGGTTTCAAGCTTCTTGAGTTGGTGGGGCTTGAGATGGACCTACCTGTGATCATGTTATCAGCACATAGTGATACTGAGCTTGTTATGAAGGGGATTTCGCATGGGGCATGTGATTATCTGTTGAAACCGGTTCGAATCGAGGAGTTGAAGAACATTTGGCAGCATGTGATTCGGAGGAAGAAGCTCGAACCGAAGGCAAAGAACAAGTTCCCTAGTGAAGATAAGGCTCGAAATGGAGGCAGTGAAGGTGAACAAGGTTTCTCATCAACCAGTAATGCAGACAATGCGAAATTCAATAGGAAGCGGAAGGACCAAGACGACGATGACGATGAAGATGGAAAGGATAACGGGCTTGATAATGACGACCCCTCGAACCAGAAGAAGCCTAGAGTAGTGTGGTCGGTTGAGTTGCACAAGAAATTCGTCTCAGCGGTTAATCAGTTGGGTCTCGAAAATTCAACCAGAAAACAAGATGGAGCTAAGAGCGTCTATGTTGTATTGCAGAAATATAGGCTTTACCTGAAAAGAATCAGCAATGTGGCATCCCAACAAGCTAACATGGTTGCTACATTTGGGAGTAAAGACGGTGCGTTCATGGGGATGGGTTCACTCGATGGATATGGAGATTTACATGGCTTTGCAGGAATGGGACGGCTTCAAAACTCTTCGTTATCATCTTATTCACCTGTTGGAATGCTTGGAAGATTGAACTCCCCGGCTGGAATGAGTCTGCGTGGAATCACCTCTTCTGGACTGATACAGCAAAACTCCAAAAATTTGAACTCCGCCATTAGTAACCTTGGGAAGCTCCAGCCAACTACTATGCTGCCTCCTAACCAACCTACTAATCTGTTGCAAGGAATTCCGACGTCGCTCGAGCTCAGCCAGCTGCAACACAGCAAGTCCACCATTCCTATTGGAGACTTCAATATAATTAATGAGACATCTGGGTTTGGAGTTCCCAACAGTTTCCCTGATAGTAGAGTGAATATTGGAAACTCAACCAATTTGGTTTCGACTGCCCCGTTGATGTTACAAGGAACCATGCCAACATATGGAAACCAGACTTCCCTTAGAGTAGATCCGCTGAATGGAGAAACTTTTGACGTAGACATTGGTGGTTCAAATTTTTTGGATCCTGATCCTTCTAATGGAACCTGGCAGGGAGCAGCACAATTGTCTAGATTCTCAGCCACTTCTTTGAATCAAAATCAAGCCTATCCTAATGATCAATTCAATGCAATAAACTCGAGCATTTCTTCGACCCCCTCAACGTTTGGGAATGTCTCGGTCGATTTTTCCTCGAGAAATGCAGTTGCAGCTCCCTTGCAGGATTCAAGAGATATGCAGTGTCAAGCAGGGGTAGTTGGCAGTGTTATTCAAACTATAAATACCATGCCGAAGCAGAGTTGGGAAGAGCTTAAACACGATCTTGGTGCAATCAATTCTCTGGTTTCTGGGAATGAGACTCTAAACCCCTTAAGCCAGAGTTTCAATCAGAATAATCTAATATATGATAGAAAGGTCAGTTCATCTTTGATGGTTCCATCAAATGCTGCTCCACTGTCCTTCGCTCAACATAACATGCTCGAAAAATTGGGTCCTAACACGAAGACGAATGTGGATGGCAACTATCTGTTGAACCAAACAAAGTCACACGATGGGTCGACTCAGGGCAGTTCCGAGTCCTTGGATTATATAATGAACGCGATGATCAAACGGGAACAAAATGAAATACCAGAAGTGAATGGAGAATTTGGATTTGATAATTTCTCTCTAGGATCGTTTTTTCGTCGGTTCGGTTCGGTTTCTGGCTGCGAGGTTGTTCCATCTCTGTCTGTTCATCCATTTACTGATGCAAAACATCTCGTTTCAAGATTTACAATGCTTCTTTCATTTGGGGAAAGCTTGGAGCGCCAACAATGGCGCCACACGACAGTTATAAGCATCCACACAACACTTCACAAGCAATCCTCTGTCTACAAATATCTTCAGCAGAAACCCAAATCTGTGTCTCTCAGGTTTGAAACAATGGCAAAGAAAGAGATGGAAGTGGTGAAAGGATTAGATCTTGAGAAGTACATGGGAAGATGGTATGAGATAGCTTCAATTCCATCGAGAAATCAGCCAAAGAATGGTGTAAACACGAGGGCTAATTATGCACTCAAGGAAGATGGAACTGTGAATGTGGTGAATGAAACTTGGAGTGATGGAAAGAGAAGTTCTATAGAAGGTGTGGCTTATAAGGCCGACCCTTCCAGCGAGGAGGCCAAGTTCAAGGTCAAATTCTATTTGCCTCCTTTTCTTCCAATCATTCCAGTTGTTGGGAATTACTGGGTTTTGTATATTGATGGTGATTACCAGTATGTCCTGATCGGAGAGCCTTCGAGGAAGAATCTTTGGATATTGTGCAGAAACACTCATCTTAACGAGGAGATATACAATCAGCTGCTTGATAAAGCCAAGGAAGAGGGTTATGATGTAAGCAAACTGCACAAGACATCACAGAGCGATCCTCCACCAGAAGATGAAGGCCCCAAAGATACCAAAGGCATATGGTGGATCAAATCCCTTCTGGGAAAATAA 2835 43.74 MTVEAHSVTSVGDDGATDRFPVGMRVLAVDDDPICLKVLETLLRRCQYHVTTTKQSIEALKMLRENRNNFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVMKGISHGACDYLLKPVRIEELKNIWQHVIRRKKLEPKAKNKFPSEDKARNGGSEGEQGFSSTSNADNAKFNRKRKDQDDDDDEDGKDNGLDNDDPSNQKKPRVVWSVELHKKFVSAVNQLGLENSTRKQDGAKSVYVVLQKYRLYLKRISNVASQQANMVATFGSKDGAFMGMGSLDGYGDLHGFAGMGRLQNSSLSSYSPVGMLGRLNSPAGMSLRGITSSGLIQQNSKNLNSAISNLGKLQPTTMLPPNQPTNLLQGIPTSLELSQLQHSKSTIPIGDFNIINETSGFGVPNSFPDSRVNIGNSTNLVSTAPLMLQGTMPTYGNQTSLRVDPLNGETFDVDIGGSNFLDPDPSNGTWQGAAQLSRFSATSLNQNQAYPNDQFNAINSSISSTPSTFGNVSVDFSSRNAVAAPLQDSRDMQCQAGVVGSVIQTINTMPKQSWEELKHDLGAINSLVSGNETLNPLSQSFNQNNLIYDRKVSSSLMVPSNAAPLSFAQHNMLEKLGPNTKTNVDGNYLLNQTKSHDGSTQGSSESLDYIMNAMIKREQNEIPEVNGEFGFDNFSLGSFFRRFGSVSGCEVVPSLSVHPFTDAKHLVSRFTMLLSFGESLERQQWRHTTVISIHTTLHKQSSVYKYLQQKPKSVSLRFETMAKKEMEVVKGLDLEKYMGRWYEIASIPSRNQPKNGVNTRANYALKEDGTVNVVNETWSDGKRSSIEGVAYKADPSSEEAKFKVKFYLPPFLPIIPVVGNYWVLYIDGDYQYVLIGEPSRKNLWILCRNTHLNEEIYNQLLDKAKEEGYDVSKLHKTSQSDPPPEDEGPKDTKGIWWIKSLLGK 944
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6081581 6087374 + Carg14100-RA Car02g00843 143329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00843 944 MobiDBLite consensus disorder prediction 149 163 - -
Car02g00843 944 MobiDBLite consensus disorder prediction 911 934 - -
Car02g00843 944 Pfam Lipocalin-like domain 772 919 IPR000566 -
Car02g00843 944 ProSitePatterns Lipocalin signature. 771 784 IPR022272 -
Car02g00843 944 MobiDBLite consensus disorder prediction 911 933 - -
Car02g00843 944 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Car02g00843 944 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Car02g00843 944 MobiDBLite consensus disorder prediction 147 210 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00843 Car-Chr2:6081581 Car10g00447 Car-Chr10:2251152 0 dispersed
Car11g00369 Car-Chr11:2025765 Car02g00843 Car-Chr2:6081581 8.03E-43 dispersed
Car12g01148 Car-Chr12:11108814 Car02g00843 Car-Chr2:6081581 1.47E-18 dispersed
Car08g00859 Car-Chr8:5737675 Car02g00843 Car-Chr2:6081581 6.33E-12 transposed
Car01g01266 Car-Chr1:11487480 Car02g00843 Car-Chr2:6081581 1.15E-21 wgd
Car10g00446 Car-Chr10:2249216 Car02g00843 Car-Chr2:6081581 3.40E-120 wgd
Car02g00843 Car-Chr2:6081581 Car09g00371 Car-Chr9:2032866 1.81E-135 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3011 PF08212 Lipocalin_2 4.20E-48 CL0116 Car TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00843 K14491 - csv:101213687 1096.65