Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00847 ATGCAGCCCTGTAGCAGAGAAATGGAAACCCTCAACTCTCTTTTAAACAACTCCCAAATCTCCCTTCAGGATCTCCATGGCGACGACCACCACCTGAATCCGCCGTCGGAGCAGATTCCGGGGTCTCAGCTCCACCATTTCGATCCGGTGGCTGCCGCCTCTCACGATGACTTCCTCGAGCAAATGCTTCATACAATCCCATCCTGTTCGTGGCCGGACCTCAACCCTTCAAACCCTAAATCCCCGTGGGACATTAACCCCATCAATAAGCCATCCAGAGATATCTCCGACACCTCTCCCGCTGCAAAGGCAGCCGTTATGCTCCAGCAACAGCTTCTATTGTCCAGAGGCATATCCTCTGTCGCCGATCATGGCCTCCCCCCTATGCCTCTCTCCCTTAGTAATGCCGATTTGGACCGCTCCCACAACGACATCGTCGACAGATCCTGCTTCCGGCCACCAAACTCGGGAGGTGGTATTCAATCGCATAGTTTCGGAGCTCAAGGAAACATGATGAATCAAGCTCCGGACGGTGGGTCCGGCGGAATTTCTCCATCTCAGCCGAAGCAGAAAGTCAGAGCTCGCAGGGGGCAAGCTACAGACCCCCACAGTATCGCGGAAAGGCTTCGAAGAGAGAGAATTGCAGAGAGAATGAAAGCCCTGCAAGAACTGGTTCCCAACGCAAACAAGACAGATAAGGCTTCAATGCTGGATGAGATCATCGACTACGTTAAATTCCTACAGCTCCAAGTCAAGGTTCTGAGCATGAGCAGGTTAGGGGGTGCAGCTGCTGTTGCTCCTCTTGGTGCTGACGTGTCCGCTGAGGGTGGTGGTGAGTGTATGCAAGGTGGGCGGAGTTCAAACGGCAGCGGAGGAAACCAAACGGCGTCGTCGAACGACAGCGTGACGGTGACGGAGCAGCAGGTGGCGAGGCTGATGGAGAAGGATATGGGATCGGCGATGCAGTATTTGCAAGGGAAAGGACTCTGTCTTATGCCGATATCACTGGCAACGGCGATTTCGACGTCCACGTGTCCCTCGAGGAATCCGATTATCAACGGCAGCGGCGGGCACCACCCAATGATGGGATCAAACGGCGAAGGGCCGTCGTCGCCGAGCATGTCGGTGTTAACAGTGCAGTCGACGAGCATGGGAAACGGATCCGTCAAGGACGCGGCCTCCGATTGA 1188 55.13 MQPCSREMETLNSLLNNSQISLQDLHGDDHHLNPPSEQIPGSQLHHFDPVAAASHDDFLEQMLHTIPSCSWPDLNPSNPKSPWDINPINKPSRDISDTSPAAKAAVMLQQQLLLSRGISSVADHGLPPMPLSLSNADLDRSHNDIVDRSCFRPPNSGGGIQSHSFGAQGNMMNQAPDGGSGGISPSQPKQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLGADVSAEGGGECMQGGRSSNGSGGNQTASSNDSVTVTEQQVARLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCPSRNPIINGSGGHHPMMGSNGEGPSSPSMSVLTVQSTSMGNGSVKDAASD 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6107613 6110042 + Carg14096-RA Car02g00847 143333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00847 395 MobiDBLite consensus disorder prediction 283 305 - -
Car02g00847 395 MobiDBLite consensus disorder prediction 277 305 - -
Car02g00847 395 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 161 353 - -
Car02g00847 395 SMART finulus 204 253 IPR011598 GO:0046983
Car02g00847 395 MobiDBLite consensus disorder prediction 366 395 - -
Car02g00847 395 MobiDBLite consensus disorder prediction 155 193 - -
Car02g00847 395 PANTHER TRANSCRIPTION FACTOR BHLH69 161 353 - -
Car02g00847 395 MobiDBLite consensus disorder prediction 24 43 - -
Car02g00847 395 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 198 247 IPR011598 GO:0046983
Car02g00847 395 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 196 258 IPR036638 GO:0046983
Car02g00847 395 Pfam Helix-loop-helix DNA-binding domain 203 248 IPR011598 GO:0046983
Car02g00847 395 MobiDBLite consensus disorder prediction 155 201 - -
Car02g00847 395 Gene3D - 193 255 IPR036638 GO:0046983
Car02g00847 395 MobiDBLite consensus disorder prediction 349 395 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00847 Car-Chr2:6107613 Car12g01123 Car-Chr12:10941072 8.68E-103 dispersed
Car02g01553 Car-Chr2:10014537 Car02g00847 Car-Chr2:6107613 8.81E-20 dispersed
Car05g00125 Car-Chr5:639016 Car02g00847 Car-Chr2:6107613 3.13E-21 dispersed
Car11g01142 Car-Chr11:9163980 Car02g00847 Car-Chr2:6107613 4.08E-23 dispersed
Car10g00442 Car-Chr10:2224460 Car02g00847 Car-Chr2:6107613 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3012 PF00010 HLH 1.50E-09 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00847 - - csv:101211609 640.188