Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00855 ATGTCGGACGAGGAGCACCACTTCGACTCCAAGGCCGACGCCGGAGCGTCCAAGACTTTCCCTCAGCAAGCTGGTACCATTCGCAAAAATGGCTACATCGTAATCAAGAACAGGCCCTGCAAGGTTGTTGAAGTTTCCACTTCAAAAACTGGAAAGCATGGACATGCGAAGTGTCACTTTGTGGCAATTGACATATTCAATGGAAAGAAACTTGAAGATATTGTTCCTTCTTCTCACAACTGTGATGTTCCCCATGTTAATCGTACTGATTATCAGCTGATTGATATATCTGAGGATGGTTTTGTCAGTCTGCTTACTGAAAATGGAAACACTAAGGATGACCTGAGGCTTCCGACCGATGATAATCTGCTTACGCAGCTTAAAGATGGGTTCGCTGAAGGAAAGGATCTTGTTCTAACTGTTATGTCTGCAATGGGAGAGGAGCAGATCTGTGCTCTCAAGGACATCGGTCCTAAAGGCTAA 483 45.13 MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKG 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6161130 6164170 + Carg14088-RA Car02g00855 143341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00855 160 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Car02g00855 160 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 156 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Car02g00855 160 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Car02g00855 160 CDD S1_eIF5A 86 156 - -
Car02g00855 160 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Car02g00855 160 SMART eIF_5a_2 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Car02g00855 160 TIGRFAM eIF_5A: translation elongation factor IF5A 18 153 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Car02g00855 160 Gene3D - 1 85 IPR014722 -
Car02g00855 160 PANTHER BNAA07G09420D PROTEIN 1 156 - -
Car02g00855 160 Gene3D - 86 159 IPR012340 -
Car02g00855 160 MobiDBLite consensus disorder prediction 1 21 - -
Car02g00855 160 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Car02g00855 160 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00855 Car-Chr2:6161130 Car04g01724 Car-Chr4:9880848 9.55E-105 dispersed
Car01g01279 Car-Chr1:11589971 Car02g00855 Car-Chr2:6161130 4.15E-112 wgd
Car10g00432 Car-Chr10:2154764 Car02g00855 Car-Chr2:6161130 3.76E-65 wgd
Car02g00855 Car-Chr2:6161130 Car09g00361 Car-Chr9:1964282 4.15E-112 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00855 K03263 - csv:101210204 325.479