Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00878 ATGGTCTTCTTCTTGTTCTTTCCTCTGCATTTCTTCACAGCTATGGTCCCTAAACTCTTCTGGTTGATCATTTTCTCTTCTGCTTTGCTTTGCCTCTCCTATGAACCTCGAAATCCTGAAGTGGAAGCTCTGATTCATGTGAAGGCAGCATTGAATGATCCGCACGCTGTGCTCAGCAATTGGGATGAAGACTCTGTGGACCCTTGCAGTTGGGCAATGATCACATGCTCCCCTGATAACCTCGTTATAGGACTAGGAGCTCCGAGCCAGTCTCTTTCCGGAACTTTGTCTGGGGCGATTGGGAACCTAACAAATCTTCGCCAAGTGTTGCTGCAGAACAATAACATTTCCGGTCAAATTCCCATTGAACTTGGAGCTCTCCCATTGCTTCAAACATTAGATCTCTCAGAAAATCACTTCTCTGGCCCTATACCAGCATCCTTTGGTCAGCTGAACGGTCTACGCTACCTGAGGGTGAACAATAATAGCTTGTCCGGGCCTTTTCCCGTGTCTTTGGCCAAAATCCCCCAGCTTGCTTTCTTGGATTTGTCTTTTAACAATCTTAGTGGACCAGTGCCTGTGTTTCCGGCCAGAACATTCAATGTGGTGGGAAATCCGATGATTTGTGGAACTAACCCTACTGAGGGTTGCTCTGGCTCAGCCAATGCCGTTGCTCTTTCTTTCTCTCTAGACTCCTCCCCTGGAAGACTCAGGTCCAAAAGAATAGCAGTGGCACTTGGGGTCAGCCTCAGCTGTGCTTTTCTGATACTCCTAGCATTTGTAATTCTTTGGCGCAGAAAGAATCACAAGACCAAGACCATTCTAGACATCAATGTAGACAATCAAGAAGTTGGACTTGTGCGCTTAGGCAACCTGAGGAACTTCAGTTTCAAAGAGCTCCAATTAGCAACAGGGCATTTCAGTTCCAAAAATATACTTGGGGCTGGAGGATTTGGTAATGTGTACAAGGGAAAGCTAGGAGATGGGAGTATGGTGGCAGTGAAACGGCTAAAAGACGTAATGGGTACCACTGGAGAGTCCCAGTTCCGCACAGAGTTGGAGATGATTAGCCTGGCAGTTCATCGCAATTTGCTTCGGCTAATTGGTTATTGTGCCACTTCTCACGAGAGGCTCTTAGTGTACCCATACATGTCAAATGGCAGTGTGAAAAAGATACAACAGGAAAAGAAGGTGGAATTGCTTGTGGACAGAGAGCTAGGGAACAACTATGATCAGATTGAGGTTGGGGAAATGTTGCAAGTGGCTCTTATTTGCACTCAGTATTTACCTGCTCACCGTCCTAAGATGTCGGAGGTGGTCCGAATGCTTGAAGGGGATGGCCTTGTTCAGAAATGGGCTGCATCCCACACTCATAATGACTTCAATGTCAACCTCTTTCATTCACGGAACAGCTGCAAAAGTACATACAACCCCACATATGCTTTGAAGAATAATGGCAACGATCGAGAACATTCAAGCATGTTGAGTTTTACAATGGACGATGATGATGATGAGCGATCTTTGGACTCCTATGCCATGGAACTCTCCGGTCCAAGATAG 1560 46.22 MVFFLFFPLHFFTAMVPKLFWLIIFSSALLCLSYEPRNPEVEALIHVKAALNDPHAVLSNWDEDSVDPCSWAMITCSPDNLVIGLGAPSQSLSGTLSGAIGNLTNLRQVLLQNNNISGQIPIELGALPLLQTLDLSENHFSGPIPASFGQLNGLRYLRVNNNSLSGPFPVSLAKIPQLAFLDLSFNNLSGPVPVFPARTFNVVGNPMICGTNPTEGCSGSANAVALSFSLDSSPGRLRSKRIAVALGVSLSCAFLILLAFVILWRRKNHKTKTILDINVDNQEVGLVRLGNLRNFSFKELQLATGHFSSKNILGAGGFGNVYKGKLGDGSMVAVKRLKDVMGTTGESQFRTELEMISLAVHRNLLRLIGYCATSHERLLVYPYMSNGSVKKIQQEKKVELLVDRELGNNYDQIEVGEMLQVALICTQYLPAHRPKMSEVVRMLEGDGLVQKWAASHTHNDFNVNLFHSRNSCKSTYNPTYALKNNGNDREHSSMLSFTMDDDDDERSLDSYAMELSGPR 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6273457 6279642 + Carg14064-RA Car02g00878 143364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00878 519 Pfam Leucine rich repeat N-terminal domain 38 77 IPR013210 -
Car02g00878 519 MobiDBLite consensus disorder prediction 483 519 - -
Car02g00878 519 Pfam Protein tyrosine and serine/threonine kinase 310 401 IPR001245 GO:0004672|GO:0006468
Car02g00878 519 Pfam Leucine rich repeat 129 188 IPR001611 GO:0005515
Car02g00878 519 ProSitePatterns Protein kinases ATP-binding region signature. 313 335 IPR017441 GO:0005524
Car02g00878 519 ProSiteProfiles Protein kinase domain profile. 307 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00878 Car-Chr2:6273457 Car04g01612 Car-Chr4:9316188 1.48E-27 dispersed
Car16g00731 Car-Chr16:4638191 Car02g00878 Car-Chr2:6273457 2.22E-42 dispersed
Car10g00409 Car-Chr10:2041851 Car02g00878 Car-Chr2:6273457 5.66E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88668 PF07714 PK_Tyr_Ser-Thr 6.40E-13 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00878 - - cmax:111485761 687.952