Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00898 ATGGGAATTGAGGGTGCGAGTGTTGTAAAGGGTTTCCGTGGCGGATGGGGCGTTGTCTCTAAACCATGCGACTCTTGCAAGACTGCCGCTGCGGCAGTCTACTGTCGACCCGACTCTGCTTTTCTCTGCCTCAATTGCGACACCAAAATTCACGGCGCTAATAAGCTCGCTTCTCGCCACGACCGCGTCTGGATGTGCGAGGTTTGTGAACAAGCTCCCGCTGCGGTCATGTGCAAGGCTGATGCTGCCGCTCTCTGTGTCACGTGCGATGCCGATATTCACTCCGCTAACCCACTTGCCCGTCGCCATGAGCGTGTCCCGGTCGAGCCTTTTTTTGATTCGGCCGAGTCATTAGTCAAACCCTCTTCCGTTTTCAATTTTCTCATGCCCACTGAATCCGACGTTAGTGGCTGCGACGGCGCCCACCACCATGAGGAGGTGGAGGTTGCCTCTTGGCTTATGTCCAACCCGCCTTTCAACTCTAAGCACGTTGACGGCCCTGAAATCAAGCCTTCTGCTGATCATATGTTCTTCACTGAAATGGATTCTTTTATTGATTTTGATTACCCAAATCCAGTCAGCGCAATTAACGACAGCGTCGTCCCCGTTCAGACAAAGCCACTCTCAACGCCGGTGATCAACCATACCCACTCCCCTGAAAATTGCTACGACATCGATTTCTGCAGATCCAAGCTCAATTCATTCGGCTATCAACCTCAATCTCTCAGCCACAGTGTTTCCTCTTCTTCCCTCGAAGTTGGAGTTGTTCCAGAAGGGAACTCGATGTCCGACATATCATACCCATTGGGTCAAACACTAAGTAACGGCACGGATTCAGGTTTACCGATGTCGGTACCAGGGAACCAAGCGACTCAATTGTGTGGAATCGATCGGGAGGCGAGAGTGTTGAGGTACAGAGAGAAAAGGAAGAACCGGAAGTTCGAGAAGACAATCCGGTACGCATCGAGAAAAGCTTATGCAGAAACCCGTCCCAGAATCAAAGGCCGGTTCGCAAAACGAAGTGATGCGTTATCAGAGGTGGATGAAATGTATGGGTCGGCCGCTTCGTCTGAGTTCCTGACAGAGTTCCAATACGGCGTGGTACCAACGTTTTGA 1116 51.43 MGIEGASVVKGFRGGWGVVSKPCDSCKTAAAAVYCRPDSAFLCLNCDTKIHGANKLASRHDRVWMCEVCEQAPAAVMCKADAAALCVTCDADIHSANPLARRHERVPVEPFFDSAESLVKPSSVFNFLMPTESDVSGCDGAHHHEEVEVASWLMSNPPFNSKHVDGPEIKPSADHMFFTEMDSFIDFDYPNPVSAINDSVVPVQTKPLSTPVINHTHSPENCYDIDFCRSKLNSFGYQPQSLSHSVSSSSLEVGVVPEGNSMSDISYPLGQTLSNGTDSGLPMSVPGNQATQLCGIDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSDALSEVDEMYGSAASSEFLTEFQYGVVPTF 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6373712 6375056 - Carg14044-RA Car02g00898 143384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00898 371 ProSiteProfiles Zinc finger B-box type profile. 23 65 IPR000315 GO:0008270
Car02g00898 371 ProSiteProfiles Zinc finger B-box type profile. 61 108 IPR000315 GO:0008270
Car02g00898 371 Pfam B-box zinc finger 21 61 IPR000315 GO:0008270
Car02g00898 371 Pfam B-box zinc finger 63 108 IPR000315 GO:0008270
Car02g00898 371 Pfam CCT motif 298 340 IPR010402 GO:0005515
Car02g00898 371 ProSiteProfiles CCT domain profile. 298 340 IPR010402 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00898 Car-Chr2:6373712 Car05g00623 Car-Chr5:3704738 6.52E-101 dispersed
Car16g00643 Car-Chr16:4091604 Car02g00898 Car-Chr2:6373712 1.05E-07 dispersed
Car05g00282 Car-Chr5:1566450 Car02g00898 Car-Chr2:6373712 1.47E-110 transposed
Car10g00391 Car-Chr10:1943234 Car02g00898 Car-Chr2:6373712 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3015 PF00643 zf-B_box 8.20E-07 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00898 - - csv:101214816 643.654