Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00917 ATGGCGATGGTCTTCTCAGATTCAAATCACTTCAAACTCGGAACCCTCCTATTTTTTTTCGTATTAGGTACTTTAACATCTAAAGTTATTATGGAGTGCAACAAAGATGAGGCAGTTAGAGCGAAAGAAATTGCTGAGAGAAAATTTACCGAGAGAAATTATTCCGCTGCAAAGAAGTTTGTTTTGAAGGCTCAAAATTTGTACCCGGGGCTTGATGGTCTCTCTCAACTGATGACAACTCTCGAAGTGTATATCTCTGCAGAGAATAAGATAAATGGGGAAGCGGATTGGTATGGAATACTTGGTGTGAACCACTCGACTGACGATGAGACTATTAGGAAACAATATAGAAAATTGGCTCTTGTCCTCCATCCTGATAAAAACAAGTCACTTGGTGCAGAGGGTGCGTTTAAATTGGTTTCAGAGGCCTGGAGTTTGTTATCTGACAAGACAAAGAGATTGGCTTATAATCAGAAGAGGGATTTGAAAGGTAGTCGACAGAAAACTTCTACCCACACTCAAAATACTTCTGTGCCGCCAAGTGCAAATGGCTTTCAAAATTTTCATAATGTTGCTTCAAATGCAAGGAACGTTCAAAGTAAAGTCCAGGTAGGGGCTACCTCATTTCAGCCTTCCCATAAGAAACCAGATACTTTTTGGACTCTTTGCAATCGATGCAAGACTCATTACGAGTACCTTGGGATCTATCTAAATCACACCCTCCTTTGCCCTAATTGTCATGAAGCTTTTTTGGCCGTAGAGAAGGCTCCACCCCCAAATGTATTCAAGTCTCCTAGTTGGTCTTCTCAGCAGCAGCTTCAAAATTCTAGACAGCATCCTGTTAGTGGCAACGTCCATGGTACTGGTAGAAATCCTAAAAATCCTGACACTGGGCATTCTGTGGGCCTTAATTCAGTTGATAATGCGAACTTTCAGTGGGGCCCTTCCTCCCGGACAGCTGGTGTTGGTAGTACTTTTTCTTCAGCTTCCGCTCAATCTGCAAATTTGGTTCAACAAGCAATTGAGAAAGGGAAAAGAGATCGCGATGAGACACAGCCATCAACTGAAGTGGAGAGGAGTCACTTTCCTTATTCAAAAAAGAAAAAAACTGATGGAATTAACAGCTATGGGGTCCACATGGCAAACCAAATAGCCAGAGGAGATGGATCAGCTGGTGTTCGTTTACCTGAATTAAATAAGAATTATCCTGATACTCAAAAGTTTTATGGTCTTTATGGTGCATTTAACAGGACAAATAGCCACAGAGAGTTGTCAATCTTTGAAACTCGGAACATGCAAATGGACAAGGCTCGAGCTGAAATTAGTAAGAAACTTAAAGAATGGAGCTCATTGGCTGAAAAATCAACTTTGAATAAACAGTCCAAGAAGCAAAAGAATGTGGTGAATGATGAAACTCCTGATATAAAAGTTAATGGTAAATTTTCTGCAAGTAGTAAAGGATGGCATGAGAGGAAGCCTCAGTCAGGCTCTTTAGCTGGTAAAAGTACAGGTAGTGAGAAAAATCCTATCTCAATTATTGTTCCAGATTCTGATTTTCATAATTTTGACTTGGACCGAGCTGAAAGCTCATTTGGGGATGATCAAGTCTGGGCTTGTTATGATGATGATGATGGAATGCCTCGTTTCTATGCTCGAATTCACAAGGTGATTTCCCGAAAACCATTCAGAATGCGCATCAGTTGGCTCAACTCAAGAAGCAACGCTGAGATTGGCCCTATGGACTGGGTAGGTTCGGGGTTCACAAAAACCTGTGGGGATTTCAGAATTGGGAGACATGAGTGCACAAGATCATTGAACTCCTTCTCACATAAAGTTTGCTGGATGAAAGGTTTACGAGGGGTGATTCGGATATTTCCTCAGAAGGGTGAAGTCTGGGCTCTTTACAGAGACTGGTCTGCAGATTGGAATAAAGATACTTCAGAAGAAACAATACACCAATACGATATGGTAGAAGTGCTTGATGATTTTAATGAAGAACAAGGCGTGTCTGTTGCTCCTCTTGTTAAGGTTGTTGGTTTCAGGACTGTGTTTCGTAAACACATGGATCTGAAAGAAGTGAGGAAGATCCCTAGAGAAGAGATGTTCCGCTTCTCCCATCAGGTCCCCAATTACTTGCTTACGGGAGAAGAAGCTCCGAATGCTCTGAGGGGTTATAGGGAATTGGATCCAGCAGCAACTCCTTTGGAGCTCCTCCAGATTGATACAGAATCTCATCAGGCAACAACAGAGGACACTGAGGTAAAAACTGAAGAAGAGATATCTCATATTAGCCAGGAAACTGTAGTTAATGAGGTGGAAGACACTTTGGAAGCTAGGAAGGTAGATTTAGTAACTCAGGAAGATGAACAAACTAAGATGCCTGGCGATGTTGTCTTCCAGGGTAGCTCAGGAAGCTGA 2418 41.85 MAMVFSDSNHFKLGTLLFFFVLGTLTSKVIMECNKDEAVRAKEIAERKFTERNYSAAKKFVLKAQNLYPGLDGLSQLMTTLEVYISAENKINGEADWYGILGVNHSTDDETIRKQYRKLALVLHPDKNKSLGAEGAFKLVSEAWSLLSDKTKRLAYNQKRDLKGSRQKTSTHTQNTSVPPSANGFQNFHNVASNARNVQSKVQVGATSFQPSHKKPDTFWTLCNRCKTHYEYLGIYLNHTLLCPNCHEAFLAVEKAPPPNVFKSPSWSSQQQLQNSRQHPVSGNVHGTGRNPKNPDTGHSVGLNSVDNANFQWGPSSRTAGVGSTFSSASAQSANLVQQAIEKGKRDRDETQPSTEVERSHFPYSKKKKTDGINSYGVHMANQIARGDGSAGVRLPELNKNYPDTQKFYGLYGAFNRTNSHRELSIFETRNMQMDKARAEISKKLKEWSSLAEKSTLNKQSKKQKNVVNDETPDIKVNGKFSASSKGWHERKPQSGSLAGKSTGSEKNPISIIVPDSDFHNFDLDRAESSFGDDQVWACYDDDDGMPRFYARIHKVISRKPFRMRISWLNSRSNAEIGPMDWVGSGFTKTCGDFRIGRHECTRSLNSFSHKVCWMKGLRGVIRIFPQKGEVWALYRDWSADWNKDTSEETIHQYDMVEVLDDFNEEQGVSVAPLVKVVGFRTVFRKHMDLKEVRKIPREEMFRFSHQVPNYLLTGEEAPNALRGYRELDPAATPLELLQIDTESHQATTEDTEVKTEEEISHISQETVVNEVEDTLEARKVDLVTQEDEQTKMPGDVVFQGSSGS 805
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6500138 6503975 - Carg14024-RA Car02g00917 143403

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00917 805 ProSiteProfiles dnaJ domain profile. 96 160 IPR001623 -
Car02g00917 805 ProSitePatterns Nt-dnaJ domain signature. 137 156 IPR018253 -
Car02g00917 805 MobiDBLite consensus disorder prediction 341 368 - -
Car02g00917 805 MobiDBLite consensus disorder prediction 160 182 - -
Car02g00917 805 Pfam DnaJ domain 96 157 IPR001623 -
Car02g00917 805 MobiDBLite consensus disorder prediction 261 305 - -
Car02g00917 805 MobiDBLite consensus disorder prediction 488 507 - -
Car02g00917 805 MobiDBLite consensus disorder prediction 341 371 - -
Car02g00917 805 MobiDBLite consensus disorder prediction 168 182 - -
Car02g00917 805 MobiDBLite consensus disorder prediction 452 507 - -
Car02g00917 805 Pfam Domain of unknown function (DUF3444) 511 717 IPR024593 -
Car02g00917 805 MobiDBLite consensus disorder prediction 262 305 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00917 - - - cmax:111490971 1546.56
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00917 Car-Chr2:6500138 Car06g01430 Car-Chr6:10196326 0 dispersed
Car10g00515 Car-Chr10:2583719 Car02g00917 Car-Chr2:6500138 1.10E-13 dispersed
Car14g01424 Car-Chr14:11944721 Car02g00917 Car-Chr2:6500138 2.01E-14 dispersed
Car15g00964 Car-Chr15:7109671 Car02g00917 Car-Chr2:6500138 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g875 . . . . . . . . . . . . Car02g00917 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi12g00624 . . Lac11g0143 Hepe06g0780 . Lcy12g0122 . . . . . . . . . . Cme09g01971
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003895 2 1 3 3 3 1 2 1 2 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car02g00917 Car_Chr02 FPKM 2.8924 3.471654 6.060492 6.627325 4.660256 5.293387 6.475968 6.245892 6.206053 5.92744