Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00937 ATGCACAAGCGAAGAACTCTAGCTCCGAAACCCACTACCAGTCAGGATTTTGCTTCAGATGACGACGAATACGACGACGTTTCATGTCAGAAGTGCGCCTCCGGCGACTCTCCGGCTGAGCTTCTTCTCTGCGACAAATGTGATAGAGGGTATCATCTCTTTTGTCTTTCCCCCATCCTCGTTTCAGTCCCCAAGGGATCCTGGTTTTGCCCGACTTGCTCCAACCACAAGAAGCTCAAATCTTTCCCTCTTGTTCAAACTAAAATTGTTGATTTTTTCCGCATCCAAAGACCTGCAGACTCCCAAACGGACTTGATGTTAGAGAATCGAAAGAAACGAAGACGGGCTGGTAGCTTAGTACTTTCTAGAAAGAGAAGGAAGCTATTGCCATTTAATCCGATTGCAGATCCTGCAAGACGCCTGGAACAAATGGCATCTCTGGCAACAGCATTGACGGCTACTGGTACAGATTACAGCAACGAGCTTACATATATGCGTGGCATGGCACCAAGGTCAGCAAACTGCGCATCTTTGGAGCACGGTGGCATGCAGGTTCTTCCTAAAGAGGACGTTGAAACCTTAAACTTGTGCAGAAGTATGATGGAGAGAGGGGAATGGCCTCCCCTTATGGTTGTTTTTGATCCTCGAGAAGGGTTTACTGTGGAGGCAGATAGGTTTATAAAGGACTTGACCATAATTACTGAATATACTGGGGATGTTGATTACCTGAGGAACCGTGAACATGATGAAGGGGATAGTATGATGACATTACTGTCTGCCACTAGCCCATCTAAAAGCCTCGTCATCTGTCCCGACAAACGTAGTAACATTGCCCGTTTCATAAATGGAATCAACAACCATACATCGGATGGTAGAAAAAAGCAAAACCTTAAGTGCGTGAGGTTCAATGTAAATGGTGAATGTAGAGTTCTACTTATTGCTAACAGAGATATATCTAAGGGAGAGAGATTGTATTATGACTACAATGGATACGAACATGAATACCCCACCGAGCATTTTGTGTAA 1026 44.83 MHKRRTLAPKPTTSQDFASDDDEYDDVSCQKCASGDSPAELLLCDKCDRGYHLFCLSPILVSVPKGSWFCPTCSNHKKLKSFPLVQTKIVDFFRIQRPADSQTDLMLENRKKRRRAGSLVLSRKRRKLLPFNPIADPARRLEQMASLATALTATGTDYSNELTYMRGMAPRSANCASLEHGGMQVLPKEDVETLNLCRSMMERGEWPPLMVVFDPREGFTVEADRFIKDLTIITEYTGDVDYLRNREHDEGDSMMTLLSATSPSKSLVICPDKRSNIARFINGINNHTSDGRKKQNLKCVRFNVNGECRVLLIANRDISKGERLYYDYNGYEHEYPTEHFV 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6638882 6641286 - Carg14004-RA Car02g00937 143423

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00937 341 MobiDBLite consensus disorder prediction 1 22 - -
Car02g00937 341 Pfam SET domain 254 329 IPR001214 GO:0005515
Car02g00937 341 Pfam PHD-finger 29 75 IPR019787 -
Car02g00937 341 ProSiteProfiles Zinc finger PHD-type profile. 26 76 IPR019787 -
Car02g00937 341 ProSitePatterns Zinc finger PHD-type signature. 29 73 IPR019786 -
Car02g00937 341 ProSiteProfiles SET domain profile. 207 329 IPR001214 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00937 K24406 ATXR5_6; [histone H3]-lysine27 N-methyltransferase [EC:2.1.1.369] - csv:101205046 629.787
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g00937 Car15g00951 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00443 Car-Chr2:3498678 Car02g00937 Car-Chr2:6638882 5.85E-76 dispersed
Car02g00444 Car-Chr2:3500915 Car02g00937 Car-Chr2:6638882 1.37E-61 dispersed
Car02g00937 Car-Chr2:6638882 Car20g00928 Car-Chr20:10055219 5.68E-76 dispersed
Car15g00951 Car-Chr15:6934791 Car02g00937 Car-Chr2:6638882 4.22E-143 transposed
Car15g00950 Car-Chr15:6933845 Car02g00937 Car-Chr2:6638882 2.54E-63 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1011 Blo06g01057 . . . . . . . . . . Cma15g01016 Car02g00937 Car15g00951 . Cpe05g00589 . . . . . . . . Cla01g00030 Cam01g0029 Cec01g0027 Cco01g0029 Clacu01g0029 Cmu01g0028 Cre09g2478 . . . . . . . . . . . Bda15g00790 . Bpe12g00344 Bma08g00393 . . Cmo02g01162 Cmo15g01080 . . . . . Cpe13g00321 Bhi12g00670 . . . Hepe06g0809 . . . . . . . . . Lsi09g00010 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001827 2 3 2 2 2 2 5 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 1 1 2 2 4 1 2 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3019 PF00856 SET 6.70E-05 No_clan Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car02g00937 Car_Chr02 FPKM 18.160105 19.117794 12.863384 13.521047 37.369377 41.661812 37.03352 19.217062 18.341309 18.709202