Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00939 ATGTACCTCAAAAAGGCATTGTGGAGCGAAGGATTCACGGCGAAGCCCGCCGCCGAATCTTCGCCGGACGATAAATCGGCGTCGGCAACGTCCTCCACCGTCGGGGAATTGGTCAATTCTCTGAACCGCCAGAGGCTCTACCGCGAAATTACTTTTTCCCTTCGAACAGGTCTAAGAGACGCCAGCGCCGAGTTTAGCTTTCTCCGAGTCCGTGGTCTTCGCAGCCTTCTCAAGTCCCTTCGCTCCATCGCGGAGTCCGATTCTACCATCCAGCTCTTCTGCCAGATTCAGTCCTTGCCGGAGCTTCAAGTGGTTCCAGTACTATTTCAACAGTCACTAAAGGAGTCAGAGGATGACCCTGTGGTAAATTTGGACCATATTTTTGGAGTGGAACCTTTGAAGATTGCTAGTCCTTCAACCGATGCTGAAGTTGCCCTCGCACTACGAGTTTTGGAAGGTTGTTGTCTCCTTCACAGAGAAAGTACTGCTTTAGCCCATCGGCACAAGGCAATTCCGGTTTTGATGAATATATTATCAATCCGTGGAGTACTTGAACAAGGTGCATGCTTAGATGCGTTGATTTCAGTAATGTTGGATTCGTCAGCTAATCAAACGGATTTTGATGTTTGCAACGGTATTGAGGAAGTTGCATTGCTCATAAGGGACAAACAAATAGATGAAAACCTCAGGTTGAAATGTGGTGAGTTTTTACTGGTACTCATTGGACATGTAAATGGGAGGGGAAGGCCTCCTCTAGCAACCATTCATGAAGACATAAGGCGGCTTCTGGGAGAGAAATCAGCCTCATTGATTTGGGCAGCCAGTCAATTCGGCTCGACTCTTGATCCTGAGCAGAGATTAACAGCCCTGCACATCCAAGCACGTCGGGTTCTCGAGTCGCTGGACTTGTATTGA 915 48.42 MYLKKALWSEGFTAKPAAESSPDDKSASATSSTVGELVNSLNRQRLYREITFSLRTGLRDASAEFSFLRVRGLRSLLKSLRSIAESDSTIQLFCQIQSLPELQVVPVLFQQSLKESEDDPVVNLDHIFGVEPLKIASPSTDAEVALALRVLEGCCLLHRESTALAHRHKAIPVLMNILSIRGVLEQGACLDALISVMLDSSANQTDFDVCNGIEEVALLIRDKQIDENLRLKCGEFLLVLIGHVNGRGRPPLATIHEDIRRLLGEKSASLIWAASQFGSTLDPEQRLTALHIQARRVLESLDLY 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6644500 6646953 - Carg14002-RA Car02g00939 143425

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00939 304 Pfam Cell division control protein 14, SIN component 138 238 IPR012535 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00939 - - - csv:101204796 538.495
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1007 Blo06g01056 . . . . . . . . . Cma02g01136 Cma15g01013 Car02g00939 . . Cpe05g00588 . . . . . . . . Cla01g00028 Cam01g0027 Cec01g0025 Cco01g0027 Clacu01g0027 Cmu01g0026 Cre09g2480 . . . . . . . . . . . Bda15g00791 . Bpe12g00343 Bma08g00394 . . Cmo02g01164 . . . . . . . Bhi12g00673 . . . Hepe06g0811 . . . . . . . . . Lsi09g00008 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010974 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car02g00939 Car_Chr02 FPKM 0.395941 0.0 0.66131 0.695701 0.0 0.0 0.0 0.895984 0.710674 0.593779