Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00941 ATGGAGATTTTCTACTTTCTGGTGTTTGGAGCATTGTCTGTAGTTGTTGCAGCTCTGGAGCTCAGCAAATCCAACAAGGATAGGATCAATACGCCCTCCGCTTTCAATGCTTTCAAGAACAATTACCTTTTTGTTTACTCTCTTATGATGGCTGGGGACTGGTTGCAGGGCCCATACGTATACTTCCTTTACAGTCAGTATGGCTTTGATAAAGGAGAGATTGGTCAGCTTTTCATTGCCGGTTTTGGGTCCTCCATGTTGTTTGGTACAATTGTTGGTTCTCTTGCTGACAAACAAGGTCGAAAGAGAGCTTGCATCACTTATTGTATTACGTACATTCTGAGTTGCATCACAAAGCATTCGCCCGAGTACAAGAGGGGCTTTGAACAGCAATGGTTGTCGATTACATTCTCAAAGGCTATATTTCTTGGCAATGGTCTTATTGCAATTCTTGCTGGGTTGTTTGGGAATGTACTCGTTGATAGTCTTTCTCTTGGACCAGTGGCACCTTTTGATGCTGCTGCCTGCTTTCTTGCAATTGGTATGGCCGTTATTATGTCATCTTGGACGGAGAACTATGGAGATCCATCAGAAAATAAGGATCTGCTCACCCAATTCAGGGGTGCTGCTGTTGCCATTGCTTCTGATGAGAAGATTGCACTGCTGGGTGCTATACAGTCTCTATTTGAAGGTTCAATGTATACCTTTGTATTCCTCTGGACACCTGCACTCAGCCCAAATAATGAGGATATTCCCCATGGCTTTATCTTTGCAACATTCATGTTGGCTTCAATGCTCGGAAGTTCCCTTGCATCTAGGTTGATGGCTCGAAACTCGCTAAAAGTTGAGAGCTATATGCAGATTGTTTTCGTTGTCTCTTCTGCCGCTCTTGTACTTCCGATTGTGACCAGTATCTTGGTAGCTCCATCAGATGTGAAAGGTGGAAGCATCTCTTTTGCAGGCTGTATCCAGTTGCTTGGCTTCTGTGTTTTTGAGTCCTGCGTTGGTATATTTTGGCCTTCCATAATGAAGATGAGATCCCAATACATTCCCGAGGAGGCTAGAAGCACCATCATGAACTTCTTCCGCATACCTCTCAACATCTTCGTATGCGTGGTGCTGTACAATGTTGATGCTTTCCCCATCACTGTGATGTTTGGCATGTGCTCCATTTTCCTCTTTGTGGCATCGATTTTACAGAGGCGGCTTCTGGCGATCGTGGATAAACCAAGTAAAGACTGGCGACTGGGCACTGGGCGAAAAGAATACCGAGACCGATCCGTTAAACATCTAAGCAAATGCAGAGAAGACGGACCACCAGTACTTAATTTGGGAGCTTCCATGGCCGAGTACTCGAACACGACGTATAGCTGTAGAAGTTGCCGCAACCCGCTTGCCTCCGGAGCTAATCTCCTTTCCAAATCCTTCTTGGCAAAATCGGGAAAAGCGTTCCTATTCTCACAAGCAAAGAACATAGTGGAGGGCCCAAAAGAGCAGAAGCTGCTAATAACAGGTATCTTCGAAACTGCAGACATACACTGCAGCATCTGTGGTCAAGTCTTGGGTTGGAAGTATCTCAAAGCTTATGATATCAAGCAGAAGTTCAAGGAAGGAAAGTTCATCATCGAAACGGCTAAGATCGTCAAGGAATACGACTAA 1659 44.91 MEIFYFLVFGALSVVVAALELSKSNKDRINTPSAFNAFKNNYLFVYSLMMAGDWLQGPYVYFLYSQYGFDKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACITYCITYILSCITKHSPEYKRGFEQQWLSITFSKAIFLGNGLIAILAGLFGNVLVDSLSLGPVAPFDAAACFLAIGMAVIMSSWTENYGDPSENKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNNEDIPHGFIFATFMLASMLGSSLASRLMARNSLKVESYMQIVFVVSSAALVLPIVTSILVAPSDVKGGSISFAGCIQLLGFCVFESCVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNVDAFPITVMFGMCSIFLFVASILQRRLLAIVDKPSKDWRLGTGRKEYRDRSVKHLSKCREDGPPVLNLGASMAEYSNTTYSCRSCRNPLASGANLLSKSFLAKSGKAFLFSQAKNIVEGPKEQKLLITGIFETADIHCSICGQVLGWKYLKAYDIKQKFKEGKFIIETAKIVKEYD 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6651589 6656902 - Carg14000-RA Car02g00941 143427

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00941 552 Pfam Sugar-tranasporters, 12 TM 125 328 IPR008509 GO:0015098|GO:0015689|GO:0016021
Car02g00941 552 ProSiteProfiles Yippee domain profile. 454 551 IPR034751 -
Car02g00941 552 Pfam Yippee zinc-binding/DNA-binding /Mis18, centromere assembly 455 548 IPR004910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00941 K24175 MFSD5; MFS transporter, MFS domain-containing protein family, molybdate-anion transporter - csv:101204554 753.051
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g00941 Car15g00946 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00941 Car-Chr2:6651589 Car15g00947 Car-Chr15:6756993 8.62E-32 dispersed
Car07g00589 Car-Chr7:2985581 Car02g00941 Car-Chr2:6651589 1.35E-18 dispersed
Car02g00940 Car-Chr2:6649255 Car02g00941 Car-Chr2:6651589 7.14E-32 tandem
Car07g00066 Car-Chr7:437128 Car02g00941 Car-Chr2:6651589 0 transposed
Car15g00946 Car-Chr15:6750267 Car02g00941 Car-Chr2:6651589 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g998 Blo06g01055 Blo15g00079 . Bda07g01948 . Bpe07g01025 . Bma14g02020 . . . Cma15g01012 Car02g00941 Car15g00946 . Cpe05g00586 . . . . . . . . Cla01g00026 Cam01g0025 Cec01g0023 Cco01g0026 Clacu01g0026 Cmu01g0025 Cre09g2482 Cone1ag1005 Cone5ag0713 Cone14ag0001 Cone15ag0002 . . . . . Blo09g00012 Bda06g00794 Bda15g00793 . Bpe12g00341 . Bma12g01220 . Cmo02g01168 . . . . . . Cpe13g00324 Bhi12g00679 . . . Hepe06g0814 . . . . . . . . . Lsi09g00006 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001828 3 2 3 2 2 2 3 2 2 2 2 2 2 2 2 2 2 3 3 2 2 2 2 2 2 2 2 3 3 2 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car02g00941 Car_Chr02 FPKM 1.009677 0.622417 21.745546 20.731359 28.622583 29.398918 25.641975 0.786325 0.641419 0.636155