Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00943 ATGGCTTCCGATCCGAAGGTTCATCTGTTCGAAGAAGTGGCAAAGCATAACAAAACGAAGGATTGTTGGCTTGTAATCTCTGGAAAGGTTTATGATGTAACTCCTTTCATGGAGGATCACCCCGGTGGCGATGAAGTATTGTTGTCTGCAACGGGAAAAGATGCCTCGAACGATTTCGAGGATGTCGGGCACAGTGATTCAGCAAGAGAAATGATGGACAAATACTACATCGGAGAAATTGATCCTTCGACGGTTCCTTCGAAGAAGATTTACATTCCATCACAACAAACCCAGTACAATCAAGATAAGACGCCCGAGTTTGTGATCAAGATCTTGCAGATACTGGTTCCCATATTTATTTTGGGTTTGGCATTTGCCGTTCGACACTACACCAAGAATGAATGA 405 43.46 MASDPKVHLFEEVAKHNKTKDCWLVISGKVYDVTPFMEDHPGGDEVLLSATGKDASNDFEDVGHSDSAREMMDKYYIGEIDPSTVPSKKIYIPSQQTQYNQDKTPEFVIKILQILVPIFILGLAFAVRHYTKNE 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6663140 6665394 + Carg13998-RA Car02g00943 143429

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00943 134 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037
Car02g00943 134 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Car02g00943 134 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Car02g00943 134 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Car02g00943 134 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Car02g00943 134 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Car02g00943 134 PANTHER CYTOCHROME B5 1 132 - -
Car02g00943 134 Pfam Cytochrome b5-like Heme/Steroid binding domain 11 80 IPR001199 -
Car02g00943 134 PANTHER CYTOCHROME B5-LIKE 1 132 - -
Car02g00943 134 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 4 86 IPR036400 -
Car02g00943 134 SMART Cyt_b5_2 8 81 IPR001199 -
Car02g00943 134 Gene3D - 1 87 IPR036400 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00943 K23490 CYB5; cytochrome b5 - csv:101207109 262.307
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g00943 Car15g00942 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00943 Car-Chr2:6663140 Car14g01692 Car-Chr14:13456992 1.32E-69 dispersed
Car14g01928 Car-Chr14:14765753 Car02g00943 Car-Chr2:6663140 3.47E-47 wgd
Car15g00942 Car-Chr15:6720301 Car02g00943 Car-Chr2:6663140 9.14E-95 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g991 . . . Bda07g01952 . . . Bma14g02023 . . Cma02g01139 Cma15g01010 Car02g00943 Car15g00942 . Cpe05g00584 . . . . . . . . Cla01g00023 Cam01g0022 Cec01g0020 Cco01g0024 Clacu01g0023 Cmu01g0022 Cre09g2485 Cone1ag1008 Cone5ag0716 . . . Csa05g00025 Chy09g01458 . . Blo09g00007 . . . . . . . Cmo02g01170 Cmo15g01073 . . . . . Cpe13g00327 Bhi12g00682 . . . Hepe06g0817 . . . . . . . . . Lsi09g00003 . . Cme09g02007
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car02g00943 CST 1 134 NADPH P450 reductases AT5G53560 77.6 1.9e-58 222.2
Car15g00942 CST 1 134 NADPH P450 reductases AT5G53560 76.1 1.1e-56 216.5
Car14g01692 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.6e-52 202.6
Car06g01070 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.3e-51 199.5
Car17g00096 . 1 133 NADPH P450 reductases AT5G53560 63.2 7.6e-47 183.7
Car02g01436 . 6 131 NADPH P450 reductases AT5G53560 63.5 4.6e-44 174.5
Car19g00129 . 42 169 NADPH P450 reductases AT5G53560 63.3 1.0e-43 173.3
Car06g01070 . 1 132 NADPH P450 reductases AT5G48810 64.9 9.4e-48 186.8
Car14g01692 . 1 132 NADPH P450 reductases AT5G48810 64.9 9.4e-48 186.8
Car17g00096 . 1 133 NADPH P450 reductases AT5G48810 63.0 1.0e-46 183.3
Car19g00129 . 40 170 NADPH P450 reductases AT5G48810 62.4 5.7e-45 177.6
Car02g01436 . 6 132 NADPH P450 reductases AT5G48810 62.0 3.7e-44 174.9
Car02g00943 CST 1 134 NADPH P450 reductases AT5G48810 58.1 1.4e-43 172.9
Car15g00942 CST 1 134 NADPH P450 reductases AT5G48810 57.4 1.8e-43 172.6
Car14g01692 . 22 133 NADPH P450 reductases AT2G32720 84.8 8.7e-51 196.8
Car06g01070 . 22 133 NADPH P450 reductases AT2G32720 83.0 4.3e-50 194.5
Car17g00096 . 22 133 NADPH P450 reductases AT2G32720 76.8 8.4e-46 180.3
Car02g01436 . 21 132 NADPH P450 reductases AT2G32720 70.5 2.8e-41 165.2
Car19g00129 . 59 170 NADPH P450 reductases AT2G32720 70.5 1.8e-40 162.5
Car02g00943 CST 22 133 NADPH P450 reductases AT2G32720 66.1 5.3e-40 161.0
Car15g00942 CST 22 133 NADPH P450 reductases AT2G32720 64.3 4.5e-39 157.9
Car07g01094 . 2 281 NADPH P450 reductases AT5G17770 81.1 2.5e-132 468.8
Car03g00161 CCT 2 281 NADPH P450 reductases AT5G17770 80.7 6.1e-131 464.2
Car06g00039 CCT 2 280 NADPH P450 reductases AT5G17770 77.5 1.1e-124 443.4
Car20g00007 . 1 253 NADPH P450 reductases AT5G17770 68.5 5.0e-101 364.8
Car02g00943 CST 1 134 NADPH P450 reductases AT5G53560 77.6 1.9e-58 222.2
Car15g00942 CST 1 134 NADPH P450 reductases AT5G53560 76.1 1.1e-56 216.5
Car14g01692 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.6e-52 202.6
Car06g01070 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.3e-51 199.5
Car17g00096 . 1 133 NADPH P450 reductases AT5G53560 63.2 7.6e-47 183.7
Car02g01436 . 6 131 NADPH P450 reductases AT5G53560 63.5 4.6e-44 174.5
Car19g00129 . 42 169 NADPH P450 reductases AT5G53560 63.3 1.0e-43 173.3
Car06g01070 . 1 132 NADPH P450 reductases AT5G48810 64.9 9.4e-48 186.8
Car14g01692 . 1 132 NADPH P450 reductases AT5G48810 64.9 9.4e-48 186.8
Car17g00096 . 1 133 NADPH P450 reductases AT5G48810 63.0 1.0e-46 183.3
Car19g00129 . 40 170 NADPH P450 reductases AT5G48810 62.4 5.7e-45 177.6
Car02g01436 . 6 132 NADPH P450 reductases AT5G48810 62.0 3.7e-44 174.9
Car02g00943 CST 1 134 NADPH P450 reductases AT5G48810 58.1 1.4e-43 172.9
Car15g00942 CST 1 134 NADPH P450 reductases AT5G48810 57.4 1.8e-43 172.6
Car14g01692 . 22 133 NADPH P450 reductases AT2G32720 84.8 8.7e-51 196.8
Car06g01070 . 22 133 NADPH P450 reductases AT2G32720 83.0 4.3e-50 194.5
Car17g00096 . 22 133 NADPH P450 reductases AT2G32720 76.8 8.4e-46 180.3
Car02g01436 . 21 132 NADPH P450 reductases AT2G32720 70.5 2.8e-41 165.2
Car19g00129 . 59 170 NADPH P450 reductases AT2G32720 70.5 1.8e-40 162.5
Car02g00943 CST 22 133 NADPH P450 reductases AT2G32720 66.1 5.3e-40 161.0
Car15g00942 CST 22 133 NADPH P450 reductases AT2G32720 64.3 4.5e-39 157.9
Car07g01094 . 2 281 NADPH P450 reductases AT5G17770 81.1 2.5e-132 468.8
Car03g00161 CCT 2 281 NADPH P450 reductases AT5G17770 80.7 6.1e-131 464.2
Car06g00039 CCT 2 280 NADPH P450 reductases AT5G17770 77.5 1.1e-124 443.4
Car20g00007 . 1 253 NADPH P450 reductases AT5G17770 68.5 5.0e-101 364.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car02g00943 Car_Chr02 FPKM 3.435115 3.221572 2.908352 2.819889 1.129454 1.291484 0.748904 0.0 0.0 0.0