Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00948 ATGCAGTCTTCTCAGCTCTCCCGCCAGGAATGGCGAGCCGTTGCTGACAATCACTCCGCTCGAGATGCCGCCGGTGAGGAAATGGAACGATCAAAGTTGACACAATCAGATGAAAGGACCATATATGAGAACCTCATGAATCATTCTGGTGAAGATGATGTGCTCTATGTCAAGGTGCAGCAGGGAAGGGAACCCCTTGATGTTGACTTCTGTTCAATTTCAATTGATGGGAATTCAGATAATGATATTTTGCAGCAACGGCTCAATGATGTCACTAGGCAGAGAGAGGATCTGCAACAGATGGAGATTGAACTTAGAGCTCAAGTTATTGCAAGATCAGAAATATTGGAAATGCGAAAGAGGTTTGATGCTCAAATGAAAGAACACAATAATGCTGCCATCAAGATGCAGGACCAACTATGTGAAAGAGACCAGGCTATTCATGAATTGGAAAGGAAATTAGAAGATAAAGACAGGGAGTTGCAATCAATTAAATTGGACAGTGAAGCGGCTTGGGCCAAGGATGATCTTCTTCGCGAACAAGATAAAGAAATAGCGACTTACAGGAGAGAACGCGATCACTCTGAGGCTGAAAGAGCTCAACAAATGAAACAAATGCATGAACTCCAAGAACACATCCATGAGAAAGAGCGGCAGTTTCTTGAGTTACAGGAGCAGCATAGGATTGCTCAAGAAACCATTTTGTACAAAGATGAACAATTGAGGGAAGCCCATGCTTGGATTGCTCGTGTCCAGGAAATGGATGCTTTGCAATCGACTACAAATCATTCCTTACAAGCTGAATTGCGTGAACGAAAGGAGCAGTATAACCAGCTATGGCTTGGTTGCCAGCGGCAGTTTGCAGAGATGGAAAGGCTTCACATGCATTCGTTGCAACAACTCCAACTCGAGTTGGCTGATGCAAGGGAAAGAAGTGGGACTTACAATGAGGAGTCAAATATATCTCAGACAAATTCTAAAGATGTATCGCAATATGGGCAAACAAATAATAGCCAATTAGGTGGAGCTGCTTCAAATGGAAATAATGGGGCACTGTCAAATGGGAATTCAGAAAATGTTCCATCTTTTAATTTGACTGGCAATTCATCTATCCAGAGTGACCATGTATCCGGTGTTCCAATGGCTCCATCATCTCTACTTGGGATGCCACCCTACCTTACTCCTGGGCAGATGGCTGCCTTGCATCCTTTTTTGATCCATCAACCAGGGGTTCCTCATTCTGTACCATCCCCAGTTCCTCAATCTCACATGGCGCATTTCTCATCATTACCAGCTGTATCATCCATCCAACCGTGGCAGACTAAACAGATTGTTTCAGAGGGTTCCAACATATCTGTTCAGAATGAGCTTCAGTCTTCTCAAAATGCTCAAAACATAATGACATCAAATACTAATTATCCCTATGAGATGACTGCTAATGGGCAAGCTCTTGAACCAGATTATCTGGATGTTCATACCAGCAAGAGAAGAGAACCTGATTCAGTGCTTTCATCGTCTTCTGGAGAAACACAGCTTGAGTCAGTGGATAGAGGATATCAAGTGGCCCCCCAACCTGATACGAGCTTGCAACATTTTGCCTCTCAATTTCATGATGCTCTAAGGATTGGTTCTGCTTCTATTCAACACAACAATGAAAAGGATCAAATTGATTTGTGTGCAGGTGGTCAAGTACTGGAGGAGCAAGGGTTAAATGGGGGAAAATTAAGTCCTGCTGTCAGTACGTTAACCTCTGATTCTTCTCCCATTCACAATGTAAACATCAGTGAAGTGGTTATCAACAATGCCTCTGGATCTGGGGCTGTTGTATCTGAAGCTATTGTTTCTTCTGGGCCGAAAATTCCAATAATGGTGGAGAAGGCCTCAGAAACCGCCCTTCTTGATGAAAGAGCATTATTAGCTTGTATTGTTCGAACTATTCCAGCCGGTGGTAGAATTCAAATAAGTTTAACACTACCAAATAGGCTATGCAAGATGCTTGCACCTTTACACTGGCATGATTATGCGAAGAAGTATGGTAAGCTTGAAGACTTCGTAGCTGGTCATCCTGAATTATTTGTGATTGAGGGCGATTATATTCAGCTTCGAGAAGGAGCACAGAAGACAATAGCAGCTACAGCAGCTTTTGCTAAGGTTGCCGCTGCAGCTGCAACTTCATCTCATTATTCATCATATTTGCCTTCTGTTGCTATGACCCCAATGGCACATACTAATCGGTCAAAGAGGATTATATCTACTGATTCAAAAAACATGAAAGCCGAGAAGACTTCTGTTCTTACTACAAATATGGCTAAGGATTCTCCACAGGGCACACTAATGAAGAATCAACCTAAAAATGGTTTTCATTCAGCCGCCGGTGGAGGTCTATTGAATGTGAAACTTTTTACTAGATCAAAGGATAGTCGTGAACTGAATGTCTCAGAAGCCAAGCCTGGTGAATCATCTGTGTTTTTGGAGTTTGAAAATGGGGCTGCTCATGATAGAACATCAAGCGGGAGCAATCAAAGCTTAGCTTCAACTGATGGGAGGTCTAGTGTCAATTTTTCTGGGAAACATCAGGGCAGAGATTGTATGACAAATGCTATAATCTTAATGGCTTACTGGGGGCCCTGGAGGGAAGGATCAGATAATACCGAGACGTTTAACCAAGAAAATCATCCCGATTTGAATGATCAGTTATCTGTAATTTCCCCGATCGGACTTGTCATCTGA 2730 42.78 MQSSQLSRQEWRAVADNHSARDAAGEEMERSKLTQSDERTIYENLMNHSGEDDVLYVKVQQGREPLDVDFCSISIDGNSDNDILQQRLNDVTRQREDLQQMEIELRAQVIARSEILEMRKRFDAQMKEHNNAAIKMQDQLCERDQAIHELERKLEDKDRELQSIKLDSEAAWAKDDLLREQDKEIATYRRERDHSEAERAQQMKQMHELQEHIHEKERQFLELQEQHRIAQETILYKDEQLREAHAWIARVQEMDALQSTTNHSLQAELRERKEQYNQLWLGCQRQFAEMERLHMHSLQQLQLELADARERSGTYNEESNISQTNSKDVSQYGQTNNSQLGGAASNGNNGALSNGNSENVPSFNLTGNSSIQSDHVSGVPMAPSSLLGMPPYLTPGQMAALHPFLIHQPGVPHSVPSPVPQSHMAHFSSLPAVSSIQPWQTKQIVSEGSNISVQNELQSSQNAQNIMTSNTNYPYEMTANGQALEPDYLDVHTSKRREPDSVLSSSSGETQLESVDRGYQVAPQPDTSLQHFASQFHDALRIGSASIQHNNEKDQIDLCAGGQVLEEQGLNGGKLSPAVSTLTSDSSPIHNVNISEVVINNASGSGAVVSEAIVSSGPKIPIMVEKASETALLDERALLACIVRTIPAGGRIQISLTLPNRLCKMLAPLHWHDYAKKYGKLEDFVAGHPELFVIEGDYIQLREGAQKTIAATAAFAKVAAAAATSSHYSSYLPSVAMTPMAHTNRSKRIISTDSKNMKAEKTSVLTTNMAKDSPQGTLMKNQPKNGFHSAAGGGLLNVKLFTRSKDSRELNVSEAKPGESSVFLEFENGAAHDRTSSGSNQSLASTDGRSSVNFSGKHQGRDCMTNAIILMAYWGPWREGSDNTETFNQENHPDLNDQLSVISPIGLVI 909
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6689241 6696135 + Carg13993-RA Car02g00948 143434

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00948 909 MobiDBLite consensus disorder prediction 315 375 - -
Car02g00948 909 MobiDBLite consensus disorder prediction 1 36 - -
Car02g00948 909 MobiDBLite consensus disorder prediction 14 36 - -
Car02g00948 909 MobiDBLite consensus disorder prediction 494 515 - -
Car02g00948 909 MobiDBLite consensus disorder prediction 500 514 - -
Car02g00948 909 MobiDBLite consensus disorder prediction 832 857 - -
Car02g00948 909 Coils Coil 147 167 - -
Car02g00948 909 Coils Coil 178 233 - -
Car02g00948 909 Coils Coil 81 108 - -
Car02g00948 909 MobiDBLite consensus disorder prediction 309 375 - -
Car02g00948 909 MobiDBLite consensus disorder prediction 831 857 - -
Car02g00948 909 Coils Coil 298 318 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00948 - - - csv:101218478 1378.62
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g00948 Car15g00935 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g00935 Car-Chr15:6677727 Car02g00948 Car-Chr2:6689241 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g982 Blo06g01050 Blo15g00076 . . . Bpe07g01028 . . . . Cma02g01147 Cma15g01000 Car02g00948 Car15g00935 . Cpe05g00579 . . . . . . . . Cla01g00014 . . Cco01g0015 Clacu01g0015 Cmu01g0015 . Cone1ag1013 Cone5ag0720 . . . Csa05g00002 Chy09g01478 . . . Bda06g00796 Bda15g00797 . . Bma08g00399 Bma12g01223 . Cmo02g01178 Cmo15g01064 . . . . . Cpe13g00335 Bhi12g00691 . . . Hepe06g0825 . . . . . . . . . . . . Cme09g02026
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004264 2 4 2 2 2 0 2 1 0 1 1 1 1 1 1 2 1 2 2 0 1 1 1 1 1 0 1 5 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car02g00948 Car_Chr02 FPKM 3.437578 2.035401 2.071431 3.75556 1.094388 0.450657 1.579772 14.065495 15.907942 16.352684