Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00967 ATGGTTCCTGCTCAGATTGGCAGAGGGACGGCTGCCGGGAGAGCTCCGGTGCTGGTTTTCTCTTTGTGGTGTCTGATCTGTCTGTCCCTCGCCGCTCGGTTATCCCCTTCCATGCAGCAGCTTGAAGTTCAGAAGCATCTCAGGCGCTTAAACAAGCCTCCATTGAAAACAATCGAGAGTCCAGATGGGGATATAATCGATTGTGTCCACATTTCTAATCAACCAGCTTTTGATCATCCTTTCCTCAAAGATCACAAAATTCTGACGAGGCCTACTTACCACCCAGAAGGGCTGTTTGATGAGAACAAGGTGTCTGAGAAGCCTAAAGAAAGAACAAACCCCATCAATCAGCTGTGGCATGCAAATGGAAGGTGCCCAGAAAACACCATTCCTATTAGGAGAACCAAGGAAGATGATGTTCTAAGAGCAAGCTCTGCCAAAAGATATGGAAAGAAAAGACATAGAAGCATTCCTCAACCGAGGTCTGCAGATCCTGATCTCATTAACCAAAGTGGTCATCAGCACGCAATAGCTTATGTGGAAGGAGATAAGTTTTATGGAGCAAAGGCCACAATCAACGTCTGGGAGCCCAAAATACAGCAGCCTAATGAGTTTAGCTTGTCTCAGTTATGGATATTAGGAGGCTCTTTTGGTCAAGATCTTAATAGTATTGAAGCTGGCTGGCAGGTCAGTCCAGATCTGTATGGCGATAACAACACAAGACTCTTCACTTACTGGACTAGCGATGCATATCAAGCCACAGGTTGCTATAACCTCCTCTGCTCAGGGTTTATTCAAGTGAACAGTGAAATAGCCATGGGAGCAAGCATCTCGCCTGTGTCTGCATTTCGAAGTCCCCAGTATGATATAAGCATACTTATCTGGAAGGATCCAAGTGAAGGACACTGGTGGATGCAGTTTGGCAATGACTACGTGTTGGGATATTGGCCATCTTTCCTGTTCTCGTACCTGGCCGACAGTGCCTCGATGGTCGAGTGGGGAGGGGAGGTTGTGAATTCAGAGCCTGATGGATTGCACACTTCAACACAGATGGGAAGTGGTCATTTTCCAGAAGAGGGGTTCGGGAAGTCGAGTTATTTCAGGAACATTCAAGTCGTTGACAGCTCTAACAATCTCAAAGCCCCCAAAGGGATTGGTACCTTTACAGAGCAATCAAACTGCTATGATGTTCAAACTGGCAGCAATGGAGATTGGGGCCATTACTTTTACTATGGAGGCCCTGGCAGAAACCAAAACTGCCCATGA 1266 46.68 MVPAQIGRGTAAGRAPVLVFSLWCLICLSLAARLSPSMQQLEVQKHLRRLNKPPLKTIESPDGDIIDCVHISNQPAFDHPFLKDHKILTRPTYHPEGLFDENKVSEKPKERTNPINQLWHANGRCPENTIPIRRTKEDDVLRASSAKRYGKKRHRSIPQPRSADPDLINQSGHQHAIAYVEGDKFYGAKATINVWEPKIQQPNEFSLSQLWILGGSFGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFIQVNSEIAMGASISPVSAFRSPQYDISILIWKDPSEGHWWMQFGNDYVLGYWPSFLFSYLADSASMVEWGGEVVNSEPDGLHTSTQMGSGHFPEEGFGKSSYFRNIQVVDSSNNLKAPKGIGTFTEQSNCYDVQTGSNGDWGHYFYYGGPGRNQNCP 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6810325 6813129 + Carg13974-RA Car02g00967 143453

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00967 421 Pfam Neprosin activation peptide 57 179 IPR025521 -
Car02g00967 421 Pfam Neprosin 203 414 IPR004314 -
Car02g00967 421 MobiDBLite consensus disorder prediction 146 168 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00967 - - - csv:101217856 829.706
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g00967 Car15g00989 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00967 Car-Chr2:6810325 Car08g00480 Car-Chr8:3038435 0 dispersed
Car11g00647 Car-Chr11:3576254 Car02g00967 Car-Chr2:6810325 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g39 . . . . Bpe01g00357 . . Bma07g01361 Cmo10g01086 . Cma10g01028 . . . Sed08g1250 Cpe05g00561 Cpe18g00089 Bhi02g01712 Tan09g1003 Cmetu02g0731 . Hepe09g0989 . . Cla02g02360 Cam02g2511 Cec02g2556 Cco02g2588 Clacu02g2483 Cmu02g2414 Cre02g2735 . . . . Lsi06g00396 . Chy05g00014 Cme05g00017 Blo08g00155 Blo14g00326 . Bda09g00349 Bpe08g00324 . Bma07g00314 Bma11g00341 Sed01g3421 Cmo02g01201 . Cma02g01168 . Car02g00967 . . Cpe04g00982 Bhi10g00479 Tan07g0580 Cmetu05g1751 . Hepe08g0012 . . Cla03g01397 Cam03g1477 Cec03g1513 Cco03g1509 Clacu03g1500 Cmu03g2057 Cre03g1727 . Csa01g03048 Chy02g01326 Cme02g00361
Vvi16g786 . . . Bda07g01903 Bpe03g00159 . . Bma14g02039 . . Cma02g01082 Cma15g01069 Car02g00967 Car15g00989 . Cpe05g00638 . . . . . . . . Cla01g00090 Cam01g0091 Cec01g0091 Cco01g0092 Clacu01g0089 Cmu01g0091 Cre09g2416 . . Cone14ag0051 Cone15ag0056 . Csa05g00102 Chy09g01392 . . Blo09g00056 . . . . . . . Cmo02g01100 Cmo15g01125 . . . . . Cpe13g00276 Bhi12g00775 . . Lac11g0078 Hepe06g0725 . Lcy12g0060 . . . . . . . Lsi09g00077 . . Cme09g01937
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000279 5 5 6 8 5 4 5 4 4 4 4 4 7 4 4 6 4 6 4 4 4 4 4 4 4 4 4 11 6 6 148
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car02g00967 Car_Chr02 FPKM 6.878788 8.126231 11.576229 11.933284 32.171581 31.276804 31.667082 0.0 0.137271 0.289252