Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01043 ATGCAGTCAAAGTCTAAAAGTGTGAATCAAGTGGAATCTGAACCACCGAATATGCAGCAGACTGGTAGTTATTCTGAACCTTGGTGGCGTAGTATTGGGTACAATCCTATCTCTCCGTCAGCAACAGGAGGGAATGTGTCCAATTCACCATCACTGGAATGTACTAATGGTGCCTCAGAATCTAATGACCAGTCAATGTCAAATGCTGATTTGAATGAAGATGATGATGATGACACCACGAAAGAAACGCAAGCTGCAAGTTATGGGCAAGGTCAGCACAACAATCAGCATGCTGTTTCTACTGCACCTAGAGTGCATGGTGGATGTATCACACAACCTCCTCAGCTTGAACTTGTAGGCCACTCTATTGCATGTGCATCAAACCAATATCAGGATCCTTATTATGCTGGACTTATGGCTGCATATGGGCATCAACCTATGGGTTATCCTCCTTTTATTGGGATGCCACATGCTAGAATGGCTTTGCCCCTTGAGGTGGCACAGGAGCCAGTTTTTGTGAATGCCAAACAGTATCAAGGGATTCTAAGGCGAAGACAAGCACGTGCTAAAGCAGAGGTTGAGAACAAACTGATAAAAGTTAGAAAGCCATATCTTCATGAATCTCGTCACCAGCATGCCATGAGACGGGCGAGGGGTACCGGTGGACGTTTTGCCAAGAAAAATGAAGCTAAATCTTTGAGCTCTACTATGAAGAGCAAGGAATCTGGTTCTGGTCAAGCTATATCGTCTAGTTCGTCTGGTTCTGAGGCTGTGCCTGGTGCCTTGGCTGAAACCTGGAATTCCTCCAATAGTCAACAAGAAGCAAGAGCCCAGTTGCATGAGTCATATGAAGCTCGTAGTTATGTGAATGGCAATAGCCATTTTCATAATTACAGTAGCTTCCAAGCTTCTTCATATGCTTTACTCTCTGGCGAGAGAGGTGAAGATGGAGACTGCTCGGGACAGCAACGAGGAAGTATCTCAGAAAATCAGGCCGCACAGAGGCGTCTTGCAATCAAATGA 1023 45.26 MQSKSKSVNQVESEPPNMQQTGSYSEPWWRSIGYNPISPSATGGNVSNSPSLECTNGASESNDQSMSNADLNEDDDDDTTKETQAASYGQGQHNNQHAVSTAPRVHGGCITQPPQLELVGHSIACASNQYQDPYYAGLMAAYGHQPMGYPPFIGMPHARMALPLEVAQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEAKSLSSTMKSKESGSGQAISSSSSGSEAVPGALAETWNSSNSQQEARAQLHESYEARSYVNGNSHFHNYSSFQASSYALLSGERGEDGDCSGQQRGSISENQAAQRRLAIK 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7268882 7272599 + Carg02706-RA Car02g01043 143529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01043 340 ProSiteProfiles NF-YA/HAP2 family profile. 167 227 IPR001289 GO:0003700|GO:0006355
Car02g01043 340 MobiDBLite consensus disorder prediction 83 101 - -
Car02g01043 340 MobiDBLite consensus disorder prediction 1 106 - -
Car02g01043 340 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 31 331 IPR001289 GO:0003700|GO:0006355
Car02g01043 340 MobiDBLite consensus disorder prediction 1 28 - -
Car02g01043 340 MobiDBLite consensus disorder prediction 207 221 - -
Car02g01043 340 MobiDBLite consensus disorder prediction 35 68 - -
Car02g01043 340 MobiDBLite consensus disorder prediction 229 259 - -
Car02g01043 340 MobiDBLite consensus disorder prediction 311 340 - -
Car02g01043 340 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 169 224 IPR001289 GO:0003700|GO:0006355
Car02g01043 340 PRINTS CCAAT-binding transcription factor subunit B signature 170 192 IPR001289 GO:0003700|GO:0006355
Car02g01043 340 PRINTS CCAAT-binding transcription factor subunit B signature 201 224 IPR001289 GO:0003700|GO:0006355
Car02g01043 340 ProSitePatterns NF-YA/HAP2 subunit signature. 172 192 IPR018362 GO:0003677|GO:0016602
Car02g01043 340 Gene3D - 167 229 - -
Car02g01043 340 MobiDBLite consensus disorder prediction 207 259 - -
Car02g01043 340 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 31 331 - -
Car02g01043 340 SMART cbf3 166 227 IPR001289 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car02g01043 Car20g00071 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01043 Car-Chr2:7268882 Car03g01306 Car-Chr3:9982414 1.42E-38 dispersed
Car10g00841 Car-Chr10:4806683 Car02g01043 Car-Chr2:7268882 1.91E-98 wgd
Car11g00728 Car-Chr11:4171458 Car02g01043 Car-Chr2:7268882 2.67E-99 wgd
Car17g00912 Car-Chr17:7508377 Car02g01043 Car-Chr2:7268882 4.60E-47 wgd
Car02g01043 Car-Chr2:7268882 Car20g00071 Car-Chr20:380402 0 wgd
Car02g01043 Car-Chr2:7268882 Car08g00437 Car-Chr8:2837087 1.52E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3025 PF02045 CBFB_NFYA 2.30E-26 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01043 K08064 - csv:101212961 545.043