Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01191 ATGGGTACACCATTGCCGTATGAGATGTACTTGAATAGAATTTCCTTGTACATTGATGGCATAACTTCGCTCGTCAACCGTAACGATCAAATCGATCCTGCCTATTTCTGCAATCTCTGCTTTTCCCTTGCCAGATGTATTGACTTTGCAATTGCAAACAACTTTGTTCCATCTAATGTTCACGGCTTACCCAGTCTCTTGAAACAGATGTGTCAGAAGAAACATTCTCATCGTTTAAAAGCAGCAGTCATGGTGCTCATGATATCCACCAAGAATGCTTGCAAGGTGAGATGGTTTTCAGAAAAGGAGGCTGAGGAACTCTACAGTCTTGCTAATGAGATTGGTAGTGATTTCTTTGGAGATACTAATTCTGGACCAAATAATTCCCTTACCACGATTACTGCAGTTATGGAAAGATTTTTTCCACACTTGAAGCTCGGCCAGATTGTTGCGGATATGGAAGTTAAGCCTGGTTATGGAGTGTTTGCTACAGATTTCAATATTTCAAAGACAATGCAGTTATCACAGCAGGAGAAAATACTACTGTTTGTTGCTCAAAAGGATAATACTGAGACGTCTGCTTGCATAATCACTCCTCCACAGGTTAACTTTCTTGTCAATGGGAAGGGAGTCAATGGAAGGACAAATATATTCATGGATACTGGGCCACAGCTTCCAACGAATGTTACTTATATGCTTAAATTAGGAGCAAATCTTCTCCAAGCGATTGGTAACTTCAATGGTCATTATGTTATAGCAGTTGCCATTATGGGGACTGCACCACTGCCTGACTCCTCGGTGCTGCAAGATTATGTACAGACGGTTGTGTCTACTGTGGATCCAGATTCTGATATAATCGAGGGCCCATCACGAATATCGCTTAATTGCCCCATAAGCTATACCCGAATCAAGGTTCCTGTGAAAAGTCGTTCTTGTAAACATCTTCAGTGCTTTGATTTCTACAACTTTATTGGCATAAATTCAAGAAGACCATCCTGGCGATGTCCCCATTGTAATCAGTACATTTGCTTTTTGGATATTCGTGTTGATCAAAATATGTTGAAGGCAAGTATAGTGGTCATTAGAGAAGTGGCTGAGAACGTTACTGAAGTGATTATCTCAGCAGATGGATCATGGAAGGCCATACTTGATAATGGGGATGGTCGGCCATTGGATGATTCTCTTAACCTTCAGAATGAAAGGGATCAAGAGTCTACTGTTCCTGTTGTGTTAGATCTTATTGAAGTTGATGATGATATAAACATCTGCGATTTGGAGATTGAAGACGAAAAACCTTGTCTTGGTAACAAAAACTTTGCGGCTGTCTTGGACGATGACTTTTGGTCTGGAATAGATACTGATAGGATTTTAACCTCAAGTGCTAGGACAGATGCTCCAATTGGTAATAACCCGCCTGCACCTAATTTTGCTGGCCTTATGCAATCGGCTGTCTTGACTAATCCTGTTACACCTGTCCTTAATAACCATGGTGCGGGGGTTCCAGGGCATGTCATCTTTTCGTCTCCTGCATTGTATGATCAAAATAATTTGCAGAGTCAAGCTTTGAATTCAAATGAAAACAGTGAGTACGGGAGGACGACATCAATAGCGAGACCCCTAAGCAGGATGCCGACTACAGCTCAAGCCCTTCCTTCTCCGTCCCAAGCATCAGGTCAGCAGTATAGTTCAAGAACAACAACCATTTCCTCAGCTCCTCAAGTCGGACATAGTATTCCAACTAACAGAGATGGTTTAAATACGATATCTCGTGATTCAGAAAGGAGCCAACAATTTCCGAGACGTCCTGGAGATTCACATCATGCAACAAACCTAGCTCCCTTTCACCACCCACCAACCTTGCAGAATCGGGATCCTCTGGATCATTCCTTCACTCCTGGTCAATCTGTTCAAGCATCGACTGCTTTAAGGCCATCCAGGGGGCTATTAACAGATTTCCAGAATCCTCACCTTCAGCAAGCGCTCAATTTAAGGATGTCCCAACTCCGGAATCAGAATCCAAGCAATAATGTCCGGCCATCATTACCATTCTCAAGAGCTATGAGTCAAGTAGGAGGTGGCTATAGTGGACCTTCTTATGCGGCTGTAGCACCTAATAGTCAAAATGCAAGAATGATGGTTGCTTCCCAGCGAGCTGAGCTGATGAGACAATCTTCAGCTATGTCGTTACAAAATCAAACTTTCAGATCAGCCCATTGTCTCCAAACAACTCCTGATGGGCTTAGGATGCCAACTGCTGGGGAGCTGAGAAATGTTGGAGGAATGTCTCAATCTATTACCCCGGCTGCGGGTTTGGTAGAGCCATCATCAGAGCAGAACTGGCAGCCCTCAGGTCGAATGCGTGGCAGTCTTTCTGGTCGAGCCTTTTCTGATGCCCATGGCCACTTAATTATCCACCCAACTCAACCTGTACAGTCTGCTCGACCTCCATCTAACTCGACTCCTACTCAACCCAGTGCTCCATCCACGCAGGCTCTAGGCTCCAATGGATTGGATACACTGGTTCCAAGGACAAGATAA 2538 43.77 MGTPLPYEMYLNRISLYIDGITSLVNRNDQIDPAYFCNLCFSLARCIDFAIANNFVPSNVHGLPSLLKQMCQKKHSHRLKAAVMVLMISTKNACKVRWFSEKEAEELYSLANEIGSDFFGDTNSGPNNSLTTITAVMERFFPHLKLGQIVADMEVKPGYGVFATDFNISKTMQLSQQEKILLFVAQKDNTETSACIITPPQVNFLVNGKGVNGRTNIFMDTGPQLPTNVTYMLKLGANLLQAIGNFNGHYVIAVAIMGTAPLPDSSVLQDYVQTVVSTVDPDSDIIEGPSRISLNCPISYTRIKVPVKSRSCKHLQCFDFYNFIGINSRRPSWRCPHCNQYICFLDIRVDQNMLKASIVVIREVAENVTEVIISADGSWKAILDNGDGRPLDDSLNLQNERDQESTVPVVLDLIEVDDDINICDLEIEDEKPCLGNKNFAAVLDDDFWSGIDTDRILTSSARTDAPIGNNPPAPNFAGLMQSAVLTNPVTPVLNNHGAGVPGHVIFSSPALYDQNNLQSQALNSNENSEYGRTTSIARPLSRMPTTAQALPSPSQASGQQYSSRTTTISSAPQVGHSIPTNRDGLNTISRDSERSQQFPRRPGDSHHATNLAPFHHPPTLQNRDPLDHSFTPGQSVQASTALRPSRGLLTDFQNPHLQQALNLRMSQLRNQNPSNNVRPSLPFSRAMSQVGGGYSGPSYAAVAPNSQNARMMVASQRAELMRQSSAMSLQNQTFRSAHCLQTTPDGLRMPTAGELRNVGGMSQSITPAAGLVEPSSEQNWQPSGRMRGSLSGRAFSDAHGHLIIHPTQPVQSARPPSNSTPTQPSAPSTQALGSNGLDTLVPRTR 845
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8109946 8123238 + Carg02557-RA Car02g01191 143677

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01191 845 MobiDBLite consensus disorder prediction 805 845 - -
Car02g01191 845 ProSiteProfiles Zinc finger SP-RING-type profile. 281 362 IPR004181 GO:0008270
Car02g01191 845 MobiDBLite consensus disorder prediction 521 593 - -
Car02g01191 845 MobiDBLite consensus disorder prediction 771 786 - -
Car02g01191 845 Pfam MIZ/SP-RING zinc finger 292 340 IPR004181 GO:0008270
Car02g01191 845 MobiDBLite consensus disorder prediction 624 639 - -
Car02g01191 845 MobiDBLite consensus disorder prediction 521 639 - -
Car02g01191 845 MobiDBLite consensus disorder prediction 771 793 - -
Car02g01191 845 MobiDBLite consensus disorder prediction 810 845 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01191 K04706 PIAS1; E3 SUMO-protein ligase PIAS1 [EC:2.3.2.-] - csv:101213115 1146.72
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g01191 Car15g01131 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00486 Car-Chr1:2858749 Car02g01191 Car-Chr2:8109946 4.30E-14 wgd
Car13g00160 Car-Chr13:1423414 Car02g01191 Car-Chr2:8109946 2.65E-12 wgd
Car15g01131 Car-Chr15:8903736 Car02g01191 Car-Chr2:8109946 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g49 . Blo03g00224 . . . Bpe07g00096 . . . . Cma02g01422 . Car02g01191 Car15g01131 . . Cpe05g00363 . . . . . . . . . . . . . . Cone8ag0274 Cone12ag0281 . Cone9ag0814 . Csa05g00237 Chy09g01264 . . . . . . . . Bma12g00067 . Cmo02g01456 Cmo15g01319 . . . . . Cpe13g00131 Bhi12g00325 . . Lac11g2043 Hepe06g1509 . Lcy12g1608 . . . . . . . Lsi09g00214 . . Cme09g01803
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003920 0 3 1 1 1 1 2 1 1 1 1 1 2 1 1 3 1 3 2 1 1 1 1 1 1 2 1 2 1 3 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car02g01191 Car_Chr02 FPKM 80.11248 87.442657 38.808514 36.433754 76.784866 64.183655 79.070206 19.072989 17.402407 19.086937