Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01207 ATGTCTTCTCCCAGCAAGCGACGCGAAATGGATTTGATGAAACTGATGATGAGTGATTACAAGGTGGAAACCATCAATGATAGCATGCAAGAGTTCTATGTCGACTTCCATGGTCCTAAAGACAGTCTTTACCAAGGAGGTGTGTGGAGGATTAGGGTGGAGTTGCCAGATGCTTATCCTTACAAGTCACCTTCAATTGGCTTCATCAACAAAATTTATCATCCAAATGTTGATGAAATGTCGGGCTCGGTTTGTTTGGATGTTATCAACCAGACATGGAGCCCTATGTTTGACCTTGTAAATGTTTTCGAAGTGTTTCTTCCACAACTTCTCCTGTATCCCAACCCGTCGGACCCGTTGAATGGCGAAGCTGCTGCAGTAATGATGCGTGATCGCGCTGCATATGAGCAAAGAGTAAAAGAATACTGTGAGAAATATGCAAAGCCAGAGGACATTGGAGGTGTTGGTGAGGAGAAATCCAGTGATGAAGAGGTGAGTGAAGATGAGTACTCCTCAGAAGATGAGGAGATGGCAGGCCAAGCTGATGCTTGA 552 44.75 MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSLYQGGVWRIRVELPDAYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAAVMMRDRAAYEQRVKEYCEKYAKPEDIGGVGEEKSSDEEVSEDEYSSEDEEMAGQADA 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8189301 8191116 + Carg02541-RA Car02g01207 143693

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01207 183 MobiDBLite consensus disorder prediction 150 183 - -
Car02g01207 183 MobiDBLite consensus disorder prediction 161 183 - -
Car02g01207 183 Pfam Ubiquitin-conjugating enzyme 10 142 IPR000608 -
Car02g01207 183 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Car02g01207 183 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01207 K10576 UBE2H, UBC8; ubiquitin-conjugating enzyme E2 H [EC:2.3.2.23] - csv:101216007 335.88
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g01207 Car06g00910 CCT
Car02g01207 Car06g00910 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01207 Car-Chr2:8189301 Car10g00130 Car-Chr10:612080 2.10E-96 dispersed
Car15g01115 Car-Chr15:8799023 Car02g01207 Car-Chr2:8189301 3.85E-116 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g14 Blo02g01112 . Bda06g00114 Bda08g00514 Bpe05g00648 . Bma07g01664 . Cmo06g01099 . . . Car02g01207 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma05g00821 Bma12g00072 . . . . . Car06g00910 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000389 3 10 1 5 4 3 5 3 3 3 3 3 5 4 4 4 3 4 5 3 4 3 3 4 4 3 4 10 11 3 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car02g01207 Car_Chr02 FPKM 83.471817 85.143387 202.543564 196.054489 39.981941 37.67506 42.439453 182.332565 197.53801 237.400223