Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01208 ATGGATGCACCTAAAGAGATATTTTTGAAAGATTACAAGATGCCTGATTACTATTTCGACATGGTGGATTTGAAATTTTTGTTGGGTGAGGAGAAGACAATCGTCAGTTCAAAAATAACAGTCTTCCCTAGAGTTGAAGGATCCAAATTTCCTCTTGTTTTGGATGGGGTTGATATGAAGTTGATTTCGATTAAGGTTAACAGCGAGGACCTCGAGGAGGCAGATTACGTTCTGGACTCCCGCCATTTGACGATCCTATCACCGCCAACTGGTTCTTTTACCTTGGAAATTGTTAATGAGATATGTCCTCAGAACAACACTTCTTTAGAGGGACTCTATAAATCAACTGGAAATTTCTCCACACAATGTGAAGCTGAAGGTTTTCGGAAGATCACATTTTACCAGGACCGTCCTGATATAATGGCGAAGTACACATGTCGAATAGAAGCCGATAAGTCATTATACCCGGTGCTACTGTCTAATGGGAATCTTATAGATCAGGGTGATCTAGAGGGTGGAAAACATTTTGCCCTCTGGGAGGATCCCTTTAAGAAACCTTGCTACTTGTTTGCTTTAGTAGCTGGCAAGTTTGTAAGCAGAGACGATGTTTTTATTACTCGTTCAGGTAGGAAAATCTCCTTGAAGATATGGACCCCGGCTGAAGACGTACCCAAGACTGAGCATGCCATGTATTCTTTGAAGGCAGCTATGAAATGGGATGAAGATGTTTTTGGACTAGAATATGATCTCGATCTCTTCAATGTTGTGGCCGTTCCAGATTTCAACATGGGAGCCATGGAAAACAAGAGTTTGAATATTTTCAATTCACAACTTGTCTTGGCATCTCCAGAAACTGCTTCTGATTCCGATTATGCTGCCATATTAGGAGTGATTGGCCATGAGTATTTCCACAACTGGACTGGCAACAGGGTGACATGCCGTGATTGGTTCCAGCTGAGCCTGAAGGAAGGTCTTACGGTGTTCCGTGATCAGGAATTTTCATCCGACATGGGAAGTCGTGCTGTAAAGCGAATTTCTGACGTTTCAAAACTCAGAAACTATCAGTTTCCACAGGATGCTGGTCCCATGGCTCATCCTGTTCGACCACATTCCTATATCAAGATGGACAATTTTTACACAGGAAAGTGTTGTTCTCTATGGGCTTGCTCAAAATTTGAGCTATTTGTTTGTTCTTTTCTTCAATTTCTACTGATGAGACTTCTTTTGAACCTTGGGGGTGCTGAAGTCGTGAGGATGTACAAGACCTTATTGGGAAGTCAAGGATTTAGAAAAGGCATGGATCTTTACTTCAAGAGGCATGATGGCCAAGCTGTTACCTGTGAAGATTTCTACGCCGCAATGCGGGATGCGAATAATGCCGATTTTGCTAACTTCTTACTATGGTACTCTCAAGCTGGGACCCCTCGAGTCAAAGTTACATCATCTTACAATTCCGATGGTCGTACTTTTACTCTGAAGTTCAGCCAAGATGTCCCACCAACTCCTGGGCAGCCAAATAAAGAGACAATGTTTATACCTGTTGCTCTTGGTCTGCTAGACTCAGCCGGCAACGATTTGCCTCTGTCCTCTATATATCATGATGGGGTGTTGCAATCTATAGCTGAAAATGATCGGCCAAAAGAAGAAGAGATCGTCTTCTCTGACATACCTGAGCGACCAGTTCCATCTTTGTTTAGGGGCTACAGTGCTCCTATCCGTCTTGAAACAGATCTAACTGACGATGATCTATTTTTCCTTCTTGCCCATGATTCTGATGAGTTCAACCGTTGGGAGGCTGGACAAGTGTTGGCACGGAAACTGATGCTCCAATTGGTGGCCGATCACCAACTAAATAAACCATTGGTTCTTAATTCGAAGTTCGTGGAGGGTCTGAGATCCATACTTTCTGACTCGAGCTTGGATAAAGAATTCATTGCGAAAGCTATAACTCTCCCCGGTGCAGGAGAAATAATGGACATGATGGCGGTGGCAGATCCCGATGCTGTTCATGCCGTTCGAACTTTCATCAGGAAGCAACTGGCCAATGCATTGAAAGCAGAGCTTCTCACTGCAGTAGAAAACAACAGGAGTTCAGAAGCATATGTGTTCAACCATCCTGAAATGGCGAGGCGTGCTTTGAAGAACATTTCTCTCGCATATCTTGCATTAGTTGAGGATACAGAGATTGCCAATCTTGTGCTTGATGAGTATAAGAACGCCTCGAATATGACCGACCAATTTGCAGCTTTGGTGGCTCTAGACCAGAAGCCAGGTGAAACTCGTGACGAGGTTCTCGCCGACTTCTACACCAAGTGGCAGCACGACTATTTGGTTGTCAACAAATGGTTTGCTCTTCAAGCCATGTCAGACATTCCTGGCAATCTTGTGAATGTTCAAAACCTCCTAAATCATCCAGCATTCGACATTCGAAATCCAAACAACGTATATTCTTTGATTGGAGGTTTCTGCAGATCCATCGTCAACTTGCACGCGAAGGACGGTTCTGGATATAAATTCTTGGGAGAAGCTGTCATGCAACTAGATAAAATTAATCCCCAGGTGGCCTCTGGAATGGTCTCTGTCTTCACGAAATGGAAGCGTTACGACGAACACCGACAAAAGCTTGCCAAGGAACAACTGGAGAAGATACTGTCTGTGAATGGACTGTCTGAAAATGTGTTTGAAATTGCATCAAAAAGCTTGGCAGCAGCTTGA 2715 43.61 MDAPKEIFLKDYKMPDYYFDMVDLKFLLGEEKTIVSSKITVFPRVEGSKFPLVLDGVDMKLISIKVNSEDLEEADYVLDSRHLTILSPPTGSFTLEIVNEICPQNNTSLEGLYKSTGNFSTQCEAEGFRKITFYQDRPDIMAKYTCRIEADKSLYPVLLSNGNLIDQGDLEGGKHFALWEDPFKKPCYLFALVAGKFVSRDDVFITRSGRKISLKIWTPAEDVPKTEHAMYSLKAAMKWDEDVFGLEYDLDLFNVVAVPDFNMGAMENKSLNIFNSQLVLASPETASDSDYAAILGVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDMGSRAVKRISDVSKLRNYQFPQDAGPMAHPVRPHSYIKMDNFYTGKCCSLWACSKFELFVCSFLQFLLMRLLLNLGGAEVVRMYKTLLGSQGFRKGMDLYFKRHDGQAVTCEDFYAAMRDANNADFANFLLWYSQAGTPRVKVTSSYNSDGRTFTLKFSQDVPPTPGQPNKETMFIPVALGLLDSAGNDLPLSSIYHDGVLQSIAENDRPKEEEIVFSDIPERPVPSLFRGYSAPIRLETDLTDDDLFFLLAHDSDEFNRWEAGQVLARKLMLQLVADHQLNKPLVLNSKFVEGLRSILSDSSLDKEFIAKAITLPGAGEIMDMMAVADPDAVHAVRTFIRKQLANALKAELLTAVENNRSSEAYVFNHPEMARRALKNISLAYLALVEDTEIANLVLDEYKNASNMTDQFAALVALDQKPGETRDEVLADFYTKWQHDYLVVNKWFALQAMSDIPGNLVNVQNLLNHPAFDIRNPNNVYSLIGGFCRSIVNLHAKDGSGYKFLGEAVMQLDKINPQVASGMVSVFTKWKRYDEHRQKLAKEQLEKILSVNGLSENVFEIASKSLAAA 904
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8205105 8211636 + Carg02540-RA Car02g01208 143694

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01208 904 Pfam Domain of unknown function (DUF3458) Ig-like fold 473 577 IPR035414 -
Car02g01208 904 Pfam Peptidase family M1 domain 231 378 IPR014782 GO:0008237|GO:0008270
Car02g01208 904 Pfam Peptidase family M1 domain 413 465 IPR014782 GO:0008237|GO:0008270
Car02g01208 904 Pfam Peptidase M1 N-terminal domain 24 189 IPR045357 -
Car02g01208 904 Pfam Domain of unknown function (DUF3458_C) ARM repeats 580 902 IPR024601 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01208 K01256 pepN; aminopeptidase N [EC:3.4.11.2] - csv:101216008 1516.52
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g01208 Car06g00910 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01208 Car-Chr2:8205105 Car14g01108 Car-Chr14:9811574 1.92E-23 dispersed
Car15g01113 Car-Chr15:8783488 Car02g01208 Car-Chr2:8205105 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g1 . . . Bda08g00515 . Bpe07g00104 . Bma14g00608 . Cmo16g00658 Cma02g01438 . Car02g01208 . . . Cpe05g00646 . . . . . . . Cla07g00786 Cam07g0848 Cec07g0901 Cco07g0883 Clacu07g0823 Cmu07g0826 Cre07g1184 . . . . . Csa05g00266 . . . . Bda07g00484 . . Bpe11g00661 . Bma12g00073 . Cmo02g01473 Cmo15g01132 . Cma16g00602 Car06g00910 . . Cpe13g00146 Bhi12g00184 . . . . . . Cla01g00250 Cam01g0255 Cec01g0247 Cco01g0261 Clacu01g0253 Cmu01g0243 Cre09g2266 Lsi09g00241 . Chy07g01225 .
Vvi2g302 . . . . . . Bma07g01666 . . . Cma02g01441 . Car02g01208 . . . Cpe05g00346 . . . . . . . . . . . . . . Cone8ag0292 Cone12ag0298 . . . Csa05g00269 Chy09g01240 . . . . Bda09g00031 . . . . . Cmo02g01477 Cmo15g01300 . . . . . Cpe13g00149 Bhi12g00279 . . Lac11g2075 Hepe06g1533 . Lcy12g1636 Cla01g00252 Cam01g0258 Cec01g0250 Cco01g0263 Clacu01g0256 Cmu01g0245 Cre09g2264 Lsi09g00243 . . Cme09g01774
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004484 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 2 1 2 1 1 1 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car02g01208 Car_Chr02 FPKM 0.865607 0.50434 32.65913 31.428736 32.95076 35.187714 28.45204 0.0 0.0 0.0