Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01215 ATGGACCCAAAAGAAGTCAAGTCCGACTTGGTTTTGATTCTGGACTTCGGCTCGCAATACACCCATCTTATCACTCGCCGGATTCGGAGCCTCTCTGTTTTTTCTCTTTGTATTTCGGGGACTTCTCCGCTCAAGGCCATCACTGATCTCAATCCACAAGTCGTTATTCTCTCTGGTGGACCTCACTCTGTCCATGCTAGCGATTCGCCGAGTTTCGCTGCTGGGTTCGTTGAGTGGGCGGAGGCGAATGGGGTTTTTGTTTTGGGTATTTGTTATGGGCTTCAGTTGATTGTGCAGAGGTTGGGAGGTGTGGTGAAGGTTGGGGAGAAGCAGGAGTATGGGAGAATGGAGATTGTGGTGGAAAAGGCTAAAGGGTTGTTTGGGACTAAGAAGGTTGGGGACAGCCAAGCTGTTTGGATGAGCCATGGTGATGAGGTGGCGAAACTTCCTGAGGGGTTTGAAGTGGTGGCGAGGAGTCAACAAGGGGCCGTCGCGGCTGTGGAAAATTATGCAAAGAAGTTCTATGGGTTACAGTATCATCCAGAGTTTCTTCTACGGTTTTCAAAGATCATGCTATTGGCCAATGATATCATTCGTGGCATACTCATTAAAGTAATCAAAGAAACTGTTGGTCCAGATGCTCACGTCATATGTGCATTATCAGGAGGTGTGGATTCAACCGTTGCTGCAACTCTTGTTCATAAGGCAATTGGGGAAAGGCTTCACTGTGTTTTTGTTGACAATGGTTTATTAAGGTATAAAGAACGAGAACGTGTTATGGAAACCTTTGAAAGCGATCTTCATTTGCCTGTTACTTGTGTTGATGCAGTTGATCATTTTCTTAGCAAGCTTAAAGGTGTAGTAGATCCTGAGGCGAAAAGAAAAATAATTGGGAAAGAGTTTATTTCTATATTTGATTCATTTGGCCACGATTTGGAACTTAAAATTGGTAAGAAGCCTTCATACTTGGTCCAAGGCACATTGTATCCTGATGTGATTGAATCTTGTCCGCCACCTGGATCTGGAAGAAACCATTCCCACACGATCAAGAGTCATCATAACGTCGGAGGACTTCCCAAGGACATGAAACTGAAACTTATTGAGCCGCTTAAGCTCCTCTTTAAGGACGAGGTACGCCAACTTGGGAGGATATTGAATGTTCCTGATGCGTTTCTAAAGCGCCACCCTTTCCCTGGGCCTGGTCTTGCAGTACGAGTGCTGGGCGATGTAACAGAAGGCAATGCATTGGAGGTTCTTCGCCAGGTTGATGAGATTTTTATTCAGTCAATCAAGGATGCTGGGCTGTATGATTCAATATGGCAAGCATTTGCAGTGTTTTTACCCATAAAATCAGTTGGAGTTCAGGGTGATCAAAGGACACATTCTCATGTTGTTGCTCTGAGAGCTGTTACCAGTCAAGATGGAATGACAGCAGATTGGTTTAACTTTGAACATCAGTTCCTGGATAATGTGGCAAGAAAAATTTGCAATAGCGTTCGGGGCGTAAACAGGGTTGTTCAAGACATCACGTCGAAGCCCCCATCAACAATCGAATGGGAATGA 1563 44.98 MDPKEVKSDLVLILDFGSQYTHLITRRIRSLSVFSLCISGTSPLKAITDLNPQVVILSGGPHSVHASDSPSFAAGFVEWAEANGVFVLGICYGLQLIVQRLGGVVKVGEKQEYGRMEIVVEKAKGLFGTKKVGDSQAVWMSHGDEVAKLPEGFEVVARSQQGAVAAVENYAKKFYGLQYHPEFLLRFSKIMLLANDIIRGILIKVIKETVGPDAHVICALSGGVDSTVAATLVHKAIGERLHCVFVDNGLLRYKERERVMETFESDLHLPVTCVDAVDHFLSKLKGVVDPEAKRKIIGKEFISIFDSFGHDLELKIGKKPSYLVQGTLYPDVIESCPPPGSGRNHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILNVPDAFLKRHPFPGPGLAVRVLGDVTEGNALEVLRQVDEIFIQSIKDAGLYDSIWQAFAVFLPIKSVGVQGDQRTHSHVVALRAVTSQDGMTADWFNFEHQFLDNVARKICNSVRGVNRVVQDITSKPPSTIEWE 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8238905 8242309 + Carg02533-RA Car02g01215 143701

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01215 520 Pfam GMP synthase C terminal domain 429 519 IPR001674 GO:0003922|GO:0005524|GO:0006164|GO:0006177
Car02g01215 520 Pfam tRNA methyl transferase HUP domain 215 252 - -
Car02g01215 520 Coils Coil 519 520 - -
Car02g01215 520 Hamap GMP synthase [glutamine-hydrolyzing] [guaA]. 8 520 IPR022955 GO:0003922|GO:0006177
Car02g01215 520 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 10 211 - -
Car02g01215 520 Pfam Glutamine amidotransferase class-I 13 198 IPR017926 -
Car02g01215 520 ProSiteProfiles GMP synthetase ATP pyrophosphatase (GMPS ATP-PPase) domain profile. 193 394 IPR025777 GO:0003921|GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01215 K01951 guaA, GMPS; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] - csv:101217911 946.036
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01215 Car-Chr2:8238905 Car04g00383 Car-Chr4:2176493 2.83E-07 dispersed
Car02g01215 Car-Chr2:8238905 Car16g00247 Car-Chr16:1570738 5.86E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g315 . . . . . . . . . . Cma02g01447 . Car02g01215 . . . Cpe05g00340 . . . . . . . . . . . . . . Cone8ag0300 . . . . Csa05g00277 Chy09g01232 . . . . . . . . . . Cmo02g01484 . . . . . . . Bhi12g00269 . . Lac11g2086 Hepe06g1540 . Lcy12g1646 Cla01g00258 Cam01g0265 Cec01g0256 Cco01g0271 Clacu01g0264 Cmu01g0253 Cre09g2256 Lsi09g00253 . . Cme09g01767
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009759 2 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car02g01215 Car_Chr02 FPKM 17.039087 13.251528 165.566498 165.531311 2.120525 2.769398 4.025453 3.065272 1.035273 1.145482