Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01224 ATGAAGTACGTGAGGCCGTTGAATTTGTTTCGCGATTTGTTAAAGGGAAATGCCCTTGAACGTGGCCGTTTCTTGGGTTTAGATGTTGGTGATAAGTATGTTGGTTTGGCCGTCTCTGATCCAGATAATAAAATCGCATCGCCTCTTAGTGTTTTGTTCAGGAAGAAAACCAATATGCATCTGATGGCTCTGGATTTTCAGAGATTGATCTCTGAACTTTCTCTGTCAGGGTTCATTGTTGGATACCCTTTCGATGGACAACGACGCAACGTCGATGTGTGTTCTTTATCTCTTGAAATTCATCATTATTCACTCTCATCTCTACTTGACATTACATTATTCTGTATACAGGCTGTGCAAGTGAAGATCTTCATCGATGACCTTTGTAAAACTGGAAAACTTGAAGGCGTAAAATATACTTTTTGGGATGAGTGCTTTACATCAAAGAATGTGGAACTTCTGATAAAACCATTGAAACTGCCTCCCATTTTGTCAAAGACAATAATTGACAAGTTTGCTGCGGTTGGAATACTTCAGGGTTACTTGGATCATTTTAACAGAAGACCAGAATTGGAAGAGAGGTAG 585 39.49 MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFDGQRRNVDVCSLSLEIHHYSLSSLLDITLFCIQAVQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELEER 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8295031 8296830 + Carg02524-RA Car02g01224 143710

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01224 194 Hamap Putative pre-16S rRNA nuclease [yqgF]. 22 186 IPR005227 GO:0006364
Car02g01224 194 Pfam Holliday junction resolvase 118 183 IPR005227 GO:0006364
Car02g01224 194 Pfam Holliday junction resolvase 23 90 IPR005227 GO:0006364
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01224 - - - csv:101219574 254.988
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g01103 Car-Chr15:8678264 Car02g01224 Car-Chr2:8295031 8.71E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g328 . . . . . . . . . . Cma02g01458 . Car02g01224 . . . Cpe05g00329 . . . . . . . . . . . . . . Cone8ag0310 . . . . Csa05g00287 Chy09g01219 . . . . . . . . . . Cmo02g01493 . . . . . . . Bhi12g00248 . . . . . . Cla01g00269 Cam01g0278 Cec01g0270 Cco01g0285 Clacu01g0277 Cmu01g0265 Cre09g2244 Lsi09g00264 . . Cme09g01756
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011892 0 3 1 0 1 1 1 1 1 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car02g01224 Car_Chr02 FPKM 11.700177 12.325639 9.607243 9.98046 13.288137 14.009489 14.635234 13.606277 13.366179 14.643797