Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01226 ATGTTCGCTGTTTCAATACGCTATCTTCTCAGAAGAAATTTCTCCAGCGTTCGATCTGTATCTTCATCTTTGGTTTTCGATAACCGAATCTTGCCCGATTCGAAGCAAACCCTATTGCATAGTACGCAGTGTTCTTCCGTAACTCGTTTCGTTTCACCGATTAATTCAGGTTCTTCGCGTCTCGGCTTGCTTTCGATTCGGTTGGATCATACTATGGCTACCCCGTCCCAGACTTCAGTCCATGACTTCACCGTTAAGGATGCTAGAGGAAATGATGTTGACCTCAGCATTTACAAAGGAAAGGTCCTCTTGATTGTCAATGTTGCCTCCCAATGTGGCTTGACTAATTCGAATTACACTGAACTGAGTCAACTATATGAAAAATATAAGGGCCAAGGACTTGAGATTCTTGCATTTCCCTGCAACCAATTTGGAAGCCAGGAGCCAGGAACCAATGAAGAGATTGTGCAGTTTGCTTGCACTCGTTTTAAGGCTGAGTACCCTATTTTTGACAAGGTGAACGTGAATGGGAACGATGCCGCTCCCCTGTACAAGTTCTTGAAGTCGAGCAAAGGTGGGCTCTTCGGAGATGCCGTTAAGTGGAACTTCTCCAAGTTCTTGGTGGACAAAGATGGGCACGTAGTTGATCGTTACGCCCCAACAACTTCCCCCCTCAGCATTGAGGATGCACAGGGAAATGATGTCAACCTTAGCATATACAAGGGTAAAGTTCTACTCATTGTCAATGTTGCTTCGAAATGTGGGATGACAAATTCGAATTATGTGGAGTTGAACCAACTATACGAGAAATACAAGGAACAAGGTTTGGAAATACTGGCATTTCCATGTAATCAGTTTGGCGATGAGGAACCGGGAAGTAACGATGAGATCAAAGATTTTATTGAAGTAAATGGAAACAATTCTGCTCCACTCTACAAGTTCTTGAAATTGGGCAAATGGGGGATATTTGGGGACGATATTCAGTGGAATTTTGCCAAGTTTCTGATCAACAAGGATGGCCAAGTAGTTGATCGTTATTACCCCACAACATCACCTCTCAGCATTGAGCATGATGTCAAGAAGCTGTTGGGTATCTCATGA 1101 43.51 MFAVSIRYLLRRNFSSVRSVSSSLVFDNRILPDSKQTLLHSTQCSSVTRFVSPINSGSSRLGLLSIRLDHTMATPSQTSVHDFTVKDARGNDVDLSIYKGKVLLIVNVASQCGLTNSNYTELSQLYEKYKGQGLEILAFPCNQFGSQEPGTNEEIVQFACTRFKAEYPIFDKVNVNGNDAAPLYKFLKSSKGGLFGDAVKWNFSKFLVDKDGHVVDRYAPTTSPLSIEDAQGNDVNLSIYKGKVLLIVNVASKCGMTNSNYVELNQLYEKYKEQGLEILAFPCNQFGDEEPGSNDEIKDFIEVNGNNSAPLYKFLKLGKWGIFGDDIQWNFAKFLINKDGQVVDRYYPTTSPLSIEHDVKKLLGIS 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8301266 8306486 - Carg02522-RA Car02g01226 143712

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01226 366 ProSiteProfiles Thioredoxin domain profile. 216 364 IPR013766 -
Car02g01226 366 ProSitePatterns Glutathione peroxidases active site. 242 257 IPR029759 -
Car02g01226 366 ProSiteProfiles Glutathione peroxidase profile. 240 366 IPR000889 GO:0004602|GO:0006979
Car02g01226 366 Pfam Glutathione peroxidase 226 315 IPR000889 GO:0004602|GO:0006979
Car02g01226 366 Pfam Glutathione peroxidase 80 188 IPR000889 GO:0004602|GO:0006979
Car02g01226 366 ProSitePatterns Glutathione peroxidases signature 2. 137 144 IPR029760 -
Car02g01226 366 ProSiteProfiles Glutathione peroxidase profile. 70 243 IPR000889 GO:0004602|GO:0006979
Car02g01226 366 ProSitePatterns Glutathione peroxidases active site. 100 115 IPR029759 -
Car02g01226 366 ProSitePatterns Glutathione peroxidases signature 2. 279 286 IPR029760 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01226 K00432 gpx, btuE, bsaA; glutathione peroxidase [EC:1.11.1.9] - csv:101220688 357.066
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g01226 Car15g01101 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01291 Car-Chr1:11642947 Car02g01226 Car-Chr2:8301266 2.50E-53 dispersed
Car02g01226 Car-Chr2:8301266 Car09g00351 Car-Chr9:1920061 6.37E-59 dispersed
Car02g01554 Car-Chr2:10018495 Car02g01226 Car-Chr2:8301266 2.81E-58 transposed
Car06g01405 Car-Chr6:10081474 Car02g01226 Car-Chr2:8301266 5.25E-64 transposed
Car15g01101 Car-Chr15:8667368 Car02g01226 Car-Chr2:8301266 8.03E-33 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g331 . . . . . . . . . . Cma02g01461 Cma15g01220 Car02g01226 Car15g01101 . . . . . . . . . . . . . . . . . Cone8ag0312 . Cone6ag0772 Cone9ag0778 . Csa05g00290 Chy09g01216 . . . . Bda09g00043 . . . Bma12g00376 . Cmo02g01496 Cmo15g01286 . . . . . . Bhi12g00244 . . . . . . Cla01g00272 Cam01g0281 Cec01g0273 Cco01g0288 Clacu01g0280 Cmu01g0268 Cre09g2241 Lsi09g00268 . . Cme09g01753
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000163 11 8 6 9 6 6 7 6 6 5 4 6 8 5 6 8 6 11 3 6 6 7 6 5 5 6 5 14 6 5 198
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car02g01226 Car_Chr02 FPKM 0.0 0.0 0.0 0.0 1.456874 2.481806 1.547476 0.0 0.0 0.0