Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01229 ATGGAGAACAGTACCTTGACTGGCTTGTTGAAGAAGGCAGCTTCTCAATTTCCTCACCGCCGGGCTCTCTCAGTCGCCGGGAAATTAGACCTGACACATGAGCGGTTGCAGGAGCTCATCGAACATGCCGCTTCTCGCTTGGTGGATGCCGGTGTTAATGCCGGAGATGTGGTGGCGCTCACCTTCCCCAATACTGTTGAGTTTGTGATCACGTTTTTGGCCATAATCCGCTGCCGAGCCACCGCTGCACCATTGAATTCGGCTTACACGGCTGAGGAGTTCGAGTTTTACTTATCGGACTCGGAATCGAAACTACTCCTTACATCGAAAGAAGGAATTCCATCGGCACAAACCGCCGCATCGAAGCTCAATATTCCTCAAGTAAATGTGAATCTGGCGAGCGGCGATGCATTTCTCGATTTCTTTCCGTCCCCAAACGAATCGAAGGTGAATATGTCGGAAATCGTTAACGATCCGTCCGACGCTGCGCTATTCCTTCACACCTCCGGCACCACCAGCCGGCCGAAGGGCGTACCGCTAACTCAACAAAACCTCGCCGCTTCTGTTCAGAACATCAAATCGGTGTACAAACTCTCTGAGTCCGACTCGACCGTGCTCGTTCTTCCGTTGTTTCACGTTCACGGACTAATGGCGGGGTTGCTATCATCACTGATCTCCGGAGCCGCTGTGACTCTTCCAGCTGCTGGACGCTTCTCTGCTTCAACGTTTTGGTCCGATATGGTCGCCTATAACGCGACGTGGTACACTGCGGTCCCTACGATTCACCAAATCATACTAGACCGCCATTTCAGTAAGCCTGAACCGTCATATCCGAAGCTCCGGTTTATTCGGAGCTGTAGCGCGTCGCTTGCACCATCGATTTTGGAACGATTGGAAAAATCATTCGGAGCTCCGGTTCTCGAGTCTTACGCGATGACCGAAGCGTCGCATCTAATGGCGTCCAATCCATTACCGGATGACGGCGTGCACAAAGCCGGATCGGTAGGGAAGCCGATCGGTCAAGAAATGGCGATTCTGGATGAGAACGGCGTGATACAACCGGAAGGTGTTAAAGGAGAAGTGTGCATTAGAGGACCAAATGTGACGAAGGGATACAAAAACAATCCAGAGGCTAACAAGGCCACCTTCTCATTCGGATGGTTCCACACCGGCGATATCGGGTTCTTCGACTCCGACGGATACTTGCATCTCGTCGGCCGGATCAAGGAGCTCATTAACCGTGGAGGTGAGAAGATATCTCCAATCGAAGTAGACGCCGTGCTTCTTTCTCACGCCGACATTGCTCAGGCCGTCGCCTTCGGAGTCCCCGACGAAAAATACGGCGAAGAGATCAATTGCGCCGTAATTCCGAGGGAGGGAAGCTCGATCGACGAAGCGGAGGTGCTGCGCTTTTGCAAGAAAAACCTTGCGTCCTTCAAGATTCCGAAGAAGGTGTTCATCACGGATTTCTTACCGAAAACTGCTTCCGGAAAGATCCAACGCCGATTCGTGGCAGAGCATTTTCTCTCAGGATTGGAGCTTGTTGCAGAATTTCTTTCCCCTGTGCTGATTCTTGCTGGTAAAATGAACGTGGAGAGTCCAAACGAGAAGAAAGAGTATGCTGCTGATCTTTCCTCCATACAGGAGGCCAGGATAAGAATCCAACCTTTCGCCCATCAAACCCCAGTTTTGACCTCTGAGAGTATTAATGCTGCTTCAGGAAAACAGCTTTTCTTCAAATGTGAATGTTTCCAGAAGGGTGGAGCCTTTAAATTCAGAGGTGCCTGCAATGCTATTTATTCACTTGATGATGAACAAGCTGCTAAAGGGGTTGTGACACACAGCAGTGGCAACCATGCTGCAGCTTTGTCTTTGGCTGCAAAACTGCGAGGGATCCCTGCATATATAGTTATACCAGAAAATGCTCCAAAATGTAAAGTTGAAAATGTGATACGTTATGGTGGTCAGGTTATTCGGAGCAAAGCCACAATACAGTCAAGAGAGATGGTCGCCTCGAAGGTTATGCAAGAAACTGGTGCGTTACTTATACATCCATATAATGATGGACGCATAATAAGCGGGCAAGGTACTATCTCGTTGGAGCTTCTAGAACAAGTCCCACAATTGGACACTTTAATCGTCCCCATAAGTGGTGGTGGTTTGATATCTGGAATTTCTGTGGCTGCAAAAGCCATCAATCCTGCCATCCGGATTTTTGCAGCAGAACCCAAGGGAGCTAATGATGCAGCCTTGTCAAAAGCAGCTGGTGAGATAGTAATATTGGCCGAGACCAACACCATAGCCGATGGTCTTCGAGCTTTTCTCGGTGACCTTACCTGGCCGATAGTACGAGATTTGGTGGACGATATAATAACTGTAGAGGACTCGGAGATAGTCGAAGCAATGAGACTTTGTCTTGAAATACTGAAAGTTGTTGTGGAACCTAGTGGAGCAATAGGCCTTGCTGCTGTTCTCTCCGACAGTTTCAAGCAAAACCCTTCATGGAAGGACTGCAATCGCATAGGCATTATACTTTCAGGAGCCATGGAGAGCCCTTCTCCGGCTTCATGCTGGAGCAATGTCGTCAAATCTCAACCTGCTCCGAAGCCTCAGCATCAGACTCCTACCTCCACCGTCCAAGTATTCGCCGACAGCTGCAAGTCCAGTCAAGGCGTTGCTGTTGCTGTTGTTGATGCCAACGCCATCATTCAAGGGGGAGAAAAGCTCTCCACCTGTGCGGATAAATTTGTTTCCGTTCCTGAGGTTTTGGATGAGGTTCGCGATCCCGTCTCTCGCCACAGACTCGCCTTCGTCCCCTTCACTCTCGAATCCATGGATCCCTCCCCCGAAGCTCTCAATAAAGTAATCAAGTTTGCAAGGGCAACTGGTGACTTACAGACCCTTTCAGATGTTGATATTAAACTTATTGCCCTCACTTACACGTTGGAGACTCAGATCCATGGGACCAAACATCTCCGTGAGTGTCCTCCCCCTGTCCACATGGTTAATACAAAGAGGTTACCTGAGAAAGACTTGCCTGGGTGGGGCTCTAACGTTCCTAATCTGGAAGAGTGGGAAGCATTAGAGCAAGATGCTGATGCTCCGCTTGATACCACATCAAAGATCCTTCCTTTGCAGGATTTAAACCTTAACATAGTCCCTTCAGATGGCCAATCCGAAGATCTTTCATTAGAGCACAAGGATGAGCATAACTCTGAGCATCAAGATGAAACTGAGAGTGGTTCAAGAAGATCAAGGAGATATCCTCCAAAGAAAAAGGAAATTAATATCGAAGGGAAGAAAATGGTGGCTGATGGAATTGATGCATCTCAGGGACAATATGATGACAATGAGGGTGATTGGACACCTGCTGTCAGTCGAAGTACTCAGAGAAGATATCTTAGGAGGAAAGCCCGGCGTGAATATTATGAGGCCTTAGCTGAAAAGGACAGTCAGCAAGATGTTGAAACCACAGATGGTGATGTCCTAGTGGAAAATAACAGATCAGGTCAATCACAGGAGCAAATCTCGGAACCAATTTCCGGAAATGGGAATGACGGTCAGATAGCAGAAGGGACAAACAACAATGAAAACCTCTCTGAAATTTTGAATCAGATGAGGTTGGAAGAAGATTCATTAAATGCTTTTCACATGGAAGGGCTTGACGCACTGAAAAAAGAAGAATTGGACATAAGTGAGGTGGAGAATAATGTAGCTGCTGAGGGTATCAACGATACAGCGAAGGATGAGATGGAACATTTAGAATACTCGAGTCAGACTAATGAAAGTGTAGACACATCAAATATAGATGATATTAGCAGTGATCAGAGTTGGATGCTGAGATCCTTGTCTGAATCAAGCGTAGCTTGTGTAACTGGTGACTTTGCAATGCAGAATGTCCTTTTGCAAATGGGTTTACGTTTGTTGGCTCCAGGAGGAATGCAGATCCGCCAACTGCATAGGTGGATTTTGAAATGTCACGCCTGCTACAATGTCACAGCTGAAATTGGAAAGATCTTTTGTCCCAAGTGTGGAAACGGTGGAACTTTGCGCAAGGTAGCTGTTACAGTTGGCGAGAACGGAGTTGTGTTAGCTTCCCGTAAGCCAAGGATTACTCTGCGTGGCACAAAGTTTTCACTTCCTCTACCCCAAGGTGGAAGGGATGCCATTACCAAGAATCTTGTTTTACGTGAAGATCAACTACCGCAGAAGTTTCTTCATCCCAAGACCAAGAAGAAAGTCAATAAACAGGGAGACGATTTCTTTGCCGTGGATGATTTCTTCAGCCATCATAACACTGATAAGAGAGCTCCTTTGCAGCCTCCCGTAAGGCAAGCTTTGGCAGTTTTTAGCGGGAAGAGAAATCCAAACGATAACCATTACTCTCGGTCTCATCATAAATAG 4404 47.57 MENSTLTGLLKKAASQFPHRRALSVAGKLDLTHERLQELIEHAASRLVDAGVNAGDVVALTFPNTVEFVITFLAIIRCRATAAPLNSAYTAEEFEFYLSDSESKLLLTSKEGIPSAQTAASKLNIPQVNVNLASGDAFLDFFPSPNESKVNMSEIVNDPSDAALFLHTSGTTSRPKGVPLTQQNLAASVQNIKSVYKLSESDSTVLVLPLFHVHGLMAGLLSSLISGAAVTLPAAGRFSASTFWSDMVAYNATWYTAVPTIHQIILDRHFSKPEPSYPKLRFIRSCSASLAPSILERLEKSFGAPVLESYAMTEASHLMASNPLPDDGVHKAGSVGKPIGQEMAILDENGVIQPEGVKGEVCIRGPNVTKGYKNNPEANKATFSFGWFHTGDIGFFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHADIAQAVAFGVPDEKYGEEINCAVIPREGSSIDEAEVLRFCKKNLASFKIPKKVFITDFLPKTASGKIQRRFVAEHFLSGLELVAEFLSPVLILAGKMNVESPNEKKEYAADLSSIQEARIRIQPFAHQTPVLTSESINAASGKQLFFKCECFQKGGAFKFRGACNAIYSLDDEQAAKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPENAPKCKVENVIRYGGQVIRSKATIQSREMVASKVMQETGALLIHPYNDGRIISGQGTISLELLEQVPQLDTLIVPISGGGLISGISVAAKAINPAIRIFAAEPKGANDAALSKAAGEIVILAETNTIADGLRAFLGDLTWPIVRDLVDDIITVEDSEIVEAMRLCLEILKVVVEPSGAIGLAAVLSDSFKQNPSWKDCNRIGIILSGAMESPSPASCWSNVVKSQPAPKPQHQTPTSTVQVFADSCKSSQGVAVAVVDANAIIQGGEKLSTCADKFVSVPEVLDEVRDPVSRHRLAFVPFTLESMDPSPEALNKVIKFARATGDLQTLSDVDIKLIALTYTLETQIHGTKHLRECPPPVHMVNTKRLPEKDLPGWGSNVPNLEEWEALEQDADAPLDTTSKILPLQDLNLNIVPSDGQSEDLSLEHKDEHNSEHQDETESGSRRSRRYPPKKKEINIEGKKMVADGIDASQGQYDDNEGDWTPAVSRSTQRRYLRRKARREYYEALAEKDSQQDVETTDGDVLVENNRSGQSQEQISEPISGNGNDGQIAEGTNNNENLSEILNQMRLEEDSLNAFHMEGLDALKKEELDISEVENNVAAEGINDTAKDEMEHLEYSSQTNESVDTSNIDDISSDQSWMLRSLSESSVACVTGDFAMQNVLLQMGLRLLAPGGMQIRQLHRWILKCHACYNVTAEIGKIFCPKCGNGGTLRKVAVTVGENGVVLASRKPRITLRGTKFSLPLPQGGRDAITKNLVLREDQLPQKFLHPKTKKKVNKQGDDFFAVDDFFSHHNTDKRAPLQPPVRQALAVFSGKRNPNDNHYSRSHHK 1467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8315583 8324673 + Carg02519-RA Car02g01229 143715

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01229 1467 Pfam Nin one binding (NOB1) Zn-ribbon like 1316 1386 IPR014881 -
Car02g01229 1467 MobiDBLite consensus disorder prediction 1166 1194 - -
Car02g01229 1467 Pfam Pyridoxal-phosphate dependent enzyme 555 847 IPR001926 -
Car02g01229 1467 MobiDBLite consensus disorder prediction 1060 1101 - -
Car02g01229 1467 Coils Coil 1189 1209 - -
Car02g01229 1467 Pfam AMP-binding enzyme C-terminal domain 423 498 IPR025110 -
Car02g01229 1467 MobiDBLite consensus disorder prediction 1053 1104 - -
Car02g01229 1467 Pfam AMP-binding enzyme 11 414 IPR000873 -
Car02g01229 1467 Pfam PIN domain of ribonuclease 896 982 IPR033411 -
Car02g01229 1467 ProSitePatterns Serine/threonine dehydratases pyridoxal-phosphate attachment site. 582 595 IPR000634 GO:0006520|GO:0030170
Car02g01229 1467 ProSitePatterns Putative AMP-binding domain signature. 165 176 IPR020845 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01229 K22133 AAE3; oxalate---CoA ligase [EC:6.2.1.8] K11883 csv:101221544 1090.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01229 Car-Chr2:8315583 Car01g01572 Car-Chr1:13071467 5.70E-60 dispersed
Car03g01073 Car-Chr3:8704845 Car02g01229 Car-Chr2:8315583 3.49E-29 dispersed
Car07g00872 Car-Chr7:4679275 Car02g01229 Car-Chr2:8315583 1.82E-35 dispersed
Car16g01194 Car-Chr16:10110298 Car02g01229 Car-Chr2:8315583 5.51E-26 dispersed
Car08g00600 Car-Chr8:3895571 Car02g01229 Car-Chr2:8315583 2.12E-36 transposed
Car15g01008 Car-Chr15:7883481 Car02g01229 Car-Chr2:8315583 0 transposed
Car15g01099 Car-Chr15:8658060 Car02g01229 Car-Chr2:8315583 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g336 . . . . . . . Bma14g00071 . . Cma02g01464 . Car02g01229 . . . Cpe05g00325 . . . . . . . . . . . . . . . . . Cone9ag0773 . Csa05g00293 Chy09g01213 . Blo03g00336 . . . . . . . . Cmo02g01499 . . . . . . . Bhi12g00238 . . Lac11g2107 Hepe06g1557 . Lcy12g1663 Cla01g00275 Cam01g0285 Cec01g0278 Cco01g0291 Clacu01g0284 Cmu01g0271 Cre09g2237 Lsi09g00272 . . Cme09g01750
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002220 2 2 3 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 3 3 2 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car02g01229 Car_Chr02 FPKM 1.213186 1.52564 3.822361 4.541191 5.87515 5.661004 5.337189 6.138188 6.303033 6.613204