Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01233 ATGGGCGGCGCCGACGAGTCTGAACCAGATTCGCAGCCGCCAGTGCCGCTTCAAAACAACTCCCTCATTCCTCACGCGGTTTCAGCTCCTCCTTCCGACAAGCTTGTTCCTCCAAAGGACAGAGATGTTGCGTTGGCTCGCGTCGAATTGGAGAAGAAGTTGGCATTGATCAAAGCATGGGAGGAGAGTGAGAAGATCAAAGCAGAGAACAGGGCATACAAACGGCTCTCTGCTATTGATTCTTGGGAGAATACCAAAAAAGCTTCAATACAAGCACAGCTGATGAAGTTAGAGGAGAAAATGGAGAAGAAGAAAGCTGAGTATGGCGAGCTAATGAAGAACAGAATCGTTGGAATTCACAAGCAAGGCGAAGAGAAGAAAGCAACCATTGAAGCCGAGCGAAGAGAACAGTGTCTCAAGGTCGAGGAGACCGCAGCAAAATATCGAGCTTCCGGGTTCACCCCGAAGACTCTACTAAGATGTTTCAGTGGTTGA 495 48.89 MGGADESEPDSQPPVPLQNNSLIPHAVSAPPSDKLVPPKDRDVALARVELEKKLALIKAWEESEKIKAENRAYKRLSAIDSWENTKKASIQAQLMKLEEKMEKKKAEYGELMKNRIVGIHKQGEEKKATIEAERREQCLKVEETAAKYRASGFTPKTLLRCFSG 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8352666 8355017 + Carg02515-RA Car02g01233 143719

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01233 164 Pfam Remorin, C-terminal region 52 156 IPR005516 -
Car02g01233 164 MobiDBLite consensus disorder prediction 1 38 - -
Car02g01233 164 Coils Coil 87 114 - -
Car02g01233 164 MobiDBLite consensus disorder prediction 12 26 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01233 - - - cmos:111459402 317.775
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g01233 Car06g00892 CCT
Car02g01233 Car06g00892 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01233 Car-Chr2:8352666 Car06g00892 Car-Chr6:6928607 8.61E-56 dispersed
Car18g01151 Car-Chr18:11348172 Car02g01233 Car-Chr2:8352666 2.40E-27 wgd
Car02g00805 Car-Chr2:5862435 Car02g01233 Car-Chr2:8352666 2.44E-42 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g347 . . . . . . . . Cmo06g01081 . Cma02g01472 . Car02g01233 . . . Cpe05g00657 . . . . . . . . . . . . . . . Cone12ag0317 . Cone9ag0765 . . Chy09g01204 . . . . . . Bpe11g00655 . . . Cmo02g01507 . Cma06g01060 . Car06g00892 . Cpe08g00557 . Bhi12g00226 . . . . . . Cla01g00283 Cam01g0293 Cec01g0286 Cco01g0299 Clacu01g0292 Cmu01g0278 Cre09g2229 Lsi09g00282 . . Cme09g01741
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000535 3 7 5 4 4 3 4 3 2 3 3 3 4 3 3 4 3 7 3 3 2 3 3 3 3 3 3 6 4 3 107
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car02g01233 Car_Chr02 FPKM 42.14109 48.795715 338.64566 353.401978 119.063477 90.702705 103.067375 1.292764 0.667683 0.883298