Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01248 ATGCAATCTCCTTGTATTAGAGAGGCCTCGAAGGCCTGCCTTCGAGGCTGCTGTCGACCTCTGTTTCTTGGTCTTCCTGATTCTTCCCTGCCATTAGCTTCAACTCCTGCATACAACTTTCATGGAGCAACACAGACGTCTCTTCACCCGAATGCTCGCTTCTCCGACCACGAATCAATTCCTTCTCTAAACGATGCGTTTACTTACTTTGTTAGAGCATACCCTCTGTACCCGGACACACAACAGATCGATCAAATCCGAGCTGATGAATACAATCATCTTGCTCTCTCCAAACATGTCTGTCTAGACTACAATGGCCAGTGTCTCTTTTCCTATGCTCAACAGCAAAGTTTCCCAATGGCTACAGCTGCTGCATATTCTTCTTCTCCATCAGGTTCCCCTCCTCCGTTTCTGCATTCCCCGGGATCGCCATTCTTCAACATCTCCCATAGATCAGCGAAACCAAATACCCAGGTGGGGAATTGTGGTCAAGAATCAGAATTTGAGTCCAGAATCAGAAGTAGAATCATGAGGTTTATGAATTTATCAGAAGATGATTACGCTATGGTATTCACAGCCAATCAATCATCAGCCTTCAAACTTCTGGCAGACACTTACCCCTTTCAGTACAATAGAAATTTGGTCACAGTTTATGATCACAAGAGCGAGGCAGTTGAATTGATGGTAGAAATCTCCAAGAAGAAAGGAGCTAGAATCAGCTCAGCTGAGTTCTTATGGCCAAATCTAACCCTCGCCACCGGAAAATTAAGAAGACTAATCGTGAGTAAACGAAAGAAGAAGAGGAAGACGAAAAGGGGGCTATTTGTTTTTCCACTTCAGTCAAGATTAACAGGAACTCCATATTCATATCAATGGCTGAACATAGCTCGGGAAAATGACTGGGATGTCTGCCTAGATACATGTGCACTCGGAGCAAAAGACATGGAAACTTTAGGCCTCTCTCTGTTCAAGCCCGAATTTCTAATTTCTTCTTTCTACAAAATTTTCGGCGAAAACCCATCAGGATTTGGCTGTTTGTTCATCAAGAAATCCAATGTTTCATTCATAGAGAGTTTAGTTACTTCACCTTCGAGTATCGGCGTTATAAGCCTTATCTCAACATCACCACAATTTTCATTTCCAGAAGAACCAGAGAGTACAGAGATCAAAACTGAACAAATCTCAAAACCCGGCCTACAAAATCAAAATCTCGCTATACCAGAGTCGTCAAATTTACCTAAAATCCGAGAGGACGCTGAAATTGAAGAGGAAGAACTCTCAATTACAGGAATCGTCGAAATAGGGACGCCCTTCGAATCGGCTCGATCAACAAACACAGAAATGGAAATAAACTGCAGAGGGTTGGACCACGCAGATTCAGTAGGTCTAAGATTAATAAGCATTAGGGGAAGGTACCTGATCAATTGGCTCACAAATGCATTGACGAACCTCCAACACCCAAATGCGGAAGAAGGGTTTAGGCAAGGGCTAGTGAGAATCTACGGCCCGAAAATCCAAATCAACCGAGGACCAGCCGTCGCATTCAACGTATTCGATTGGAAAGGGGAAAAGGTGGATCCAAGTATGGTTCAGAAACTAGCCGATAGGAACAACATATCGTTGAGCAATGGATTTCTGAAGCACACAAGTTTCTCGGATAAGAACGAGGAGGAGTTTGAAATGAGAAAAGAGAGAGTGGTGGAAGAAGGTGAAAGAACGGATAGAAGCGAGAAACGACATTGTTGGATCTCAGTGGTGTCGGCGGGCGTTGGATTTTTGACGAATTTTGAAGATGTTTACAGGCTTTGGGCTTTTGTTTCCAGGTTTCTGGATGCAGATTTTGTGGAGAAGGAGAGATGGAGATATATGGCTCTTAATCAAAACACAATTGAAGTTTGA 1899 43.34 MQSPCIREASKACLRGCCRPLFLGLPDSSLPLASTPAYNFHGATQTSLHPNARFSDHESIPSLNDAFTYFVRAYPLYPDTQQIDQIRADEYNHLALSKHVCLDYNGQCLFSYAQQQSFPMATAAAYSSSPSGSPPPFLHSPGSPFFNISHRSAKPNTQVGNCGQESEFESRIRSRIMRFMNLSEDDYAMVFTANQSSAFKLLADTYPFQYNRNLVTVYDHKSEAVELMVEISKKKGARISSAEFLWPNLTLATGKLRRLIVSKRKKKRKTKRGLFVFPLQSRLTGTPYSYQWLNIARENDWDVCLDTCALGAKDMETLGLSLFKPEFLISSFYKIFGENPSGFGCLFIKKSNVSFIESLVTSPSSIGVISLISTSPQFSFPEEPESTEIKTEQISKPGLQNQNLAIPESSNLPKIREDAEIEEEELSITGIVEIGTPFESARSTNTEMEINCRGLDHADSVGLRLISIRGRYLINWLTNALTNLQHPNAEEGFRQGLVRIYGPKIQINRGPAVAFNVFDWKGEKVDPSMVQKLADRNNISLSNGFLKHTSFSDKNEEEFEMRKERVVEEGERTDRSEKRHCWISVVSAGVGFLTNFEDVYRLWAFVSRFLDADFVEKERWRYMALNQNTIEV 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8436304 8438202 + Carg02500-RA Car02g01248 143734

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01248 - - - csv:101220052 993.416
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01248 Car-Chr2:8436304 Car07g00716 Car-Chr7:3693813 4.10E-35 dispersed
Car02g00772 Car-Chr2:5623987 Car02g01248 Car-Chr2:8436304 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g414 . . . . . . . . . . Cma02g01490 . Car02g01248 . . . Cpe05g00301 . . . . . . . . . . . . . . . . . Cone15ag0129 . Csa05g00332 Chy09g01177 . . . . . . . . . . Cmo02g01529 . . . . . . . Bhi12g00186 . . Lac11g2149 Hepe06g1593 . Lcy12g1710 Cla01g00309 Cam01g0321 Cec01g0312 Cco01g0329 Clacu01g0322 Cmu01g0307 . Lsi09g00317 . . Cme09g01710
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013740 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 0 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car02g01248 Car_Chr02 FPKM 9.552052 10.810411 9.088547 9.596842 15.255739 15.902315 15.434919 12.010995 12.322654 13.116613