Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01254 ATGGTGAGGGGAAAAACTCAAATGAAGCGCATAGAGAATGCTACAAGCCGGCAAGTGACCTTCTCAAAGCGGAGAAATGGGCTGCTGAAGAAGGCCTTTGAGCTATCAGTTCTTTGTGATGCTGAAGTTGCTCTTATCATTTTCTCTCCAAGAGGCAAACTTTATGAGTTTTCAAATTGCAGTATGAACAAGACAATTGATCGGTATCAGAACAGAACCAAAGAAATTATGTGTACAAACAACCAAGGTTTAGAAGATGTGCAGTTGGAGAAGGAATTTGACTCATTTACCATGACTAAGAAGTTACAGCACCTTGAAGTTTGTAAAAGAAAATTAATGGGAGATGGCTTGGATTTGTGCTCCATGGAAGAGTTACAGCAGCTTGAAAGGCAAATTGAAAGAAGCTTAACAAAAATTAGGTCAAGAAAGTATCAATTACTGAAGGAAGAAATTACGAAGCTGAAGGAAGAGGAGAAAATGTTGCTGGAAGAAAATGCAGCTCTCCTGAAGAAGGTTGGAAGTGAATGGAACCGCCACAGACAGAGCCATGGATTGTAA 558 39.96 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNCSMNKTIDRYQNRTKEIMCTNNQGLEDVQLEKEFDSFTMTKKLQHLEVCKRKLMGDGLDLCSMEELQQLERQIERSLTKIRSRKYQLLKEEITKLKEEEKMLLEENAALLKKVGSEWNRHRQSHGL 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8458346 8461146 + Carg02494-RA Car02g01254 143740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01254 185 Pfam K-box region 97 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car02g01254 185 Coils Coil 122 142 - -
Car02g01254 185 Coils Coil 144 171 - -
Car02g01254 185 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car02g01254 185 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Car02g01254 185 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Car02g01254 185 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car02g01254 Car06g00953 CCT
Car02g01254 Car15g01075 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01254 Car-Chr2:8458346 Car08g00827 Car-Chr8:5522695 5.22E-62 dispersed
Car15g01075 Car-Chr15:8437266 Car02g01254 Car-Chr2:8458346 3.00E-97 wgd
Car02g00770 Car-Chr2:5617406 Car02g01254 Car-Chr2:8458346 1.18E-10 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3044 PF01486 K-box 1.60E-21 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01254 - - csv:101220518 273.092