Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01261 ATGTTGCTATCAGTACGAATCATTCAACTTGACAAGCCAAAACTCCTTGCAGGCCTCACCACAACCTTCCAATTGCTATCTTTTAATGCGTTTGAAAGTTTCATACACAATTGCCGGCCACTTCCCCAATATAAACCATCCTCTTCGGTGAGTTCACCAAGTGCATCAAGCATTAGCCTTTTCCCTTACACAATGGTTGCTTTCCCTTCTCTTTTTCTTCTTCTATTGCTCAACTTTCATTATGTTGGGGCTTTAGTGACTGAGCTTCCGTTGATCAATCTTCAAACGTACATTGTCCATGTGAAGAAACCAGAGACAACGGACGATCTCGAGATCTGGCATCGATCGTTCTTACCGTCGAGTTCGAGTTTGCTATACTCATATCGAAATGTGATGAGTGGTTTTGCTGCAAGACTAAGTGAAGAACAAGTGAAAGCAATGGAAGAGATGGATGGTTTTGTGTCAGCAAGGCGAGAAAGGATATTGCAATTGCATACAACTCACACCCCTGATTTTCTTGGATTGAATCGCCAATTTGGGTTTTGGAAAGATTCAAACTTTGGAAAGGGAGTGATCATAGGAGTGTTGGATGGCGGAATTGCGCCAAGCCATCCTTCATTTGATGATGTGGGAATGCCACCACCGCCACCCAAATGGAAAGGAAGATGCGAGTTTAATTTCTCAGCCTGCAACAACAAGCTTATAGGTGCCAGATCTTTTAATCTCGCAACAAAAGCCTTGAAAGGAGAGACAATGATGGATGACTCTCCTATTGATGAAGATGGTCATGGGACTCACACAGCGAGCACAGCTGCTGGTGCCTTCGTCAAGGGCGCTGAGGCATTGGGAAACGCTAAAGGCACGGCCGTTGGCATGGCCCCTTTAGCTCATCTAGCAATTTACAAAGTTTGCTTTGGAGAAGACTGCCCTGATACCGACATTCTCGCAGCACTTGATGCCGCTATTGAAGACGGCGTCGATGTGCTCTCACTCTCGCTTGGGAGCCCATCGGTTCCATTCTTCCAAGACTTAGTCGCCATAGGTGCATTCGCAGCCATTCAAAAGGGGATTTTTGTGAGTTGCTCAGCTGCTAATTCAGGCCCTTTTAAAGCCACATTGTCCAACGAAGCGCCGTGGATTCTAACGGTTGCAGCCAGCACCATTGATCGAAGAATCAAAGCCGCTGCAAAGCTTGGAAATGGAGAAGAATTTGATGGCGAATCTCTGTTCCAACCAAGTGATTTCCCACCAACATTGTTGCCACTTGTTTACGCTGGTGAGAAGAATCAAACAGCCGCTTTGTGTGGAGAAGGATCATTGAAAGACATAGACGTAAAGGGAAAAGTTGTGGTATGCGAAAGAGGAGGAGGAATTGCAAGAATTGCAAAAGGGACCGAAGTCAAGAACGCAGGGGGCGCCGCCATGATCCTCCTAAACCAACAACAAGATGGGTTCAGTACCGAAGCAGATGCTCACGTTCTTCCGGCAAGCCACGTCAGCCACAAGGCGGCGTTGAAGATCAAAGCCTACATAAACTCAACAACATACCCAACAGCCACAATTCTTTTCAAAGGAACCGTAATTGGCGATGACAACTTTTCACCCGCCATAGCTTCTTTTTCATCTCGAGGTCCCAGCGTTGCAAGCCCTGGAATTTTGAAGCCCGACATAACCGGTCCAGGTGTCAGCATTTTAGCCGCATGGCCATTTCCCTTAGACAAAAACAGAAACACAAAATCAACATTCAACATAATTTCAGGAACATCCATGTCCTGTCCTCATCTCAGCGGCATTGCAGCTCTAATCAAAAGCTCTCACCCTGATTGGTCACCGGCCGCCATTAAATCCGCCATAATGACAACCGCTGACATAACAAATCTTGAAGGCCAACCAATTGTGGATGAAAATTTACAACCGGCGGATTTGTTTGCAACTGGCGCTGGTCATGTCAACCCATCAAAAGCAGCCGACCCAGGATTAGTTTATGACATTCAACCCGATGATTACATTCCTTATCTTTGTGGATTGGGATACAAAAGTAACGAAGTTGCAACAATTGCCCGTAAACCAATTAATTGTTTGGCAAAACCAAGCATTCCCGAAGGAGACCTCAACTATCCATCATTTACGGTCGTTTTAGGACCGCCGCAAACATTTACAAGAACAGTAACGAATGTCGGGTGTGGACGTGAAGTTTATACTGCCGTGGTCGAAGCATCGCCGTCCATTTCTGTAACAATCCGACCAAGTAAGATATTCTTCTCAAAGATTAACCAAAAAGTGACATTTTCAGTGACGTTCAAGAGAATTGGTTCGATTAGTCCCTCAACAGAATTTGGTAAAGGATATCTCAAATGGGTTTCCGACAAACACGTCGTTAGAAGTCCGATCTCTTTTAAGTTTGCATGA 2409 45.37 MLLSVRIIQLDKPKLLAGLTTTFQLLSFNAFESFIHNCRPLPQYKPSSSVSSPSASSISLFPYTMVAFPSLFLLLLLNFHYVGALVTELPLINLQTYIVHVKKPETTDDLEIWHRSFLPSSSSLLYSYRNVMSGFAARLSEEQVKAMEEMDGFVSARRERILQLHTTHTPDFLGLNRQFGFWKDSNFGKGVIIGVLDGGIAPSHPSFDDVGMPPPPPKWKGRCEFNFSACNNKLIGARSFNLATKALKGETMMDDSPIDEDGHGTHTASTAAGAFVKGAEALGNAKGTAVGMAPLAHLAIYKVCFGEDCPDTDILAALDAAIEDGVDVLSLSLGSPSVPFFQDLVAIGAFAAIQKGIFVSCSAANSGPFKATLSNEAPWILTVAASTIDRRIKAAAKLGNGEEFDGESLFQPSDFPPTLLPLVYAGEKNQTAALCGEGSLKDIDVKGKVVVCERGGGIARIAKGTEVKNAGGAAMILLNQQQDGFSTEADAHVLPASHVSHKAALKIKAYINSTTYPTATILFKGTVIGDDNFSPAIASFSSRGPSVASPGILKPDITGPGVSILAAWPFPLDKNRNTKSTFNIISGTSMSCPHLSGIAALIKSSHPDWSPAAIKSAIMTTADITNLEGQPIVDENLQPADLFATGAGHVNPSKAADPGLVYDIQPDDYIPYLCGLGYKSNEVATIARKPINCLAKPSIPEGDLNYPSFTVVLGPPQTFTRTVTNVGCGREVYTAVVEASPSISVTIRPSKIFFSKINQKVTFSVTFKRIGSISPSTEFGKGYLKWVSDKHVVRSPISFKFA 802
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8478096 8480504 - Carg02487-RA Car02g01261 143747

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01261 802 ProSiteProfiles Serine proteases, subtilase domain profile. 172 656 - -
Car02g01261 802 Pfam Subtilase family 188 634 IPR000209 GO:0006508|GO:0008236
Car02g01261 802 Pfam PA domain 421 506 IPR003137 -
Car02g01261 802 Pfam Fibronectin type-III domain 703 798 IPR041469 -
Car02g01261 802 Pfam Peptidase inhibitor I9 96 165 IPR010259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01261 - - - cpep:111786140 1320.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01261 Car-Chr2:8478096 Car05g00130 Car-Chr5:659431 0 dispersed
Car02g01261 Car-Chr2:8478096 Car10g00692 Car-Chr10:3589429 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g434 . . . . . . . . . Cmo16g01045 Cma02g01498 . Car02g01261 . . . Cpe05g00291 . . . . . . . . . . . . . . Cone8ag0344 . . . . Csa05g00344 Chy09g01163 . . . Bda07g00509 . . . . . . Cmo02g01539 . . . . . . . Bhi12g00343 . . . Hepe06g1605 . Lcy12g1726 . . . . . . . Lsi09g00337 . . Cme09g01695
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002315 3 2 1 2 2 2 1 1 3 3 2 2 1 2 2 1 2 3 1 1 2 8 1 0 2 5 1 1 2 3 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car02g01261 Car_Chr02 FPKM 0.0 0.0 0.0 1.772027 1.001684 1.232174 1.900818 1.208705 0.0 0.140769