Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01268 ATGGCCTCAACCCTCTCGAATTCTGTTCAGTCGGGTCGGATTCGGGTTTTGAAAGATGCAACGGGTACTGTAGATCGACCTGTGGGTCCGGTGGTTTATTGGATGTCTAGGGATCAACGAGTAAAAGACAACTGGGCGTTGATACACGCCGTGGACGAGGCTAACAAAGCAAATGTTCCTGTTGCTGTGGCATTCGATTTATTCGATCAATTTTTGGGGGCAAACTCTCGGCAATTAGGAAAAGGAGCTGATGTTCCTGAAATTGAATGGTGTAAACCAGGGGAAAAAGCGGCACTGGAAGTGATGATGGGTAGTAAAGATGGGTTTTTGACTAAGAGGTTGAAGAGCTATGCAAATGATAGGAACAATCCATTAAAACCTAAGGGCCTCTCTGGCCTCTCCCCATATTTAATCCCTGAGGTGTTCCTTGAGGAGTTGATTGTTAGAAGGGAACTTCCTGATAATTACTGCTACCACCAGCCTCCTTATGATTCACTGCTTGGGGCTTTGGAATGGGCGCGTAAAACCTTGATGGACCATGCTTCCGATAAGCGAGAACATGTTTACTCCTAG 573 46.25 MASTLSNSVQSGRIRVLKDATGTVDRPVGPVVYWMSRDQRVKDNWALIHAVDEANKANVPVAVAFDLFDQFLGANSRQLGKGADVPEIEWCKPGEKAALEVMMGSKDGFLTKRLKSYANDRNNPLKPKGLSGLSPYLIPEVFLEELIVRRELPDNYCYHQPPYDSLLGALEWARKTLMDHASDKREHVYS 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8505841 8507357 - Carg02480-RA Car02g01268 143754

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01268 190 Pfam DNA photolyase 31 77 IPR006050 -
Car02g01268 190 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 29 166 IPR006050 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01268 K01669 phr, PHR1; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] - csv:101211446 192.971
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g01055 Car-Chr15:8323290 Car02g01268 Car-Chr2:8505841 8.06E-42 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g476 . . . . . . . Bma14g00015 . . . . Car02g01268 . . . . . . . . . . . . . . . . . . . . Cone6ag0716 Cone9ag0717 . Csa05g00371 . . Blo03g00391 . . . . Bpe11g00249 . . . Cmo02g01547 . . . . . . Cpe13g00206 Bhi12g00370 . . Lac11g2214 Hepe06g1631 . Lcy12g1755 Cla01g00346 Cam01g0362 Cec01g0358 Cco01g0371 Clacu01g0365 Cmu01g0345 Cre09g2164 Lsi09g00373 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016053 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 2 1 0 0 0 0 0 0 0 0 0 3 0 9
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car02g01268 Car_Chr02 FPKM 16.416361 15.708523 14.841713 15.292379 11.051303 10.659114 11.49412 19.095005 19.103647 19.090002