Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car02g01272 | ACCGGTGGATCAACGCCATCTGCGGCGGAGGCGGCGGCTTCTCAACCAGCTTCGACTCCGCTGCCCACGGCGGCCTCCTCAGTTCCGGGAAAGAAGAAAAGAGGGCGGCCGAGAAAATATGGACCCGATGGCTCTGTCAGTATGGCTCTGTCTCCGAAGCCAATATCATCATCGGTGCCGCCGCCGGTGATCGACTTCTCGACGGAGAAGAAGGGGAAAGTGCGGCCGGCGAGCGCTGTGAGCAAAAGAAAGTTCGAAGTGGATAATTTAGGTGACTGGGTTCCATGTTCTGTTGGTGCAAATTTTACACCTCATATCATCACTGTCAACACAGGCGAGGATGTCACAATGAAGATAATATCCTTTTCTCAGCAAGGGCCTCGAGCTATATGTATTTTGTCTGCAAACGGTGTGATCTCAAGTGTCACTCTCCGTCAGCCTGACTCCTCTGGAGGAACACTAACATATGAGGGTCGCTTTGAAATACTGTCCTTGTCTGGCTCATTCATGCCTAGTGATAATGGAGGAACTCGAGGTAGATCTGGTGGAATGAGTGTTTCCTTAGCAAGTCCAGACGGGCGTGTCGTAGGTGGTGGAGTAGCTGGTCTATTAGTAGCTGCAAGTCCTGTTCAGGTTGTAGTAGGGAGTTTTCTATCTGGAAACCAACAAGAGCAGAACCCAAAAAAGCCAAAACAAGATACTATTTCAACGGCCTCGCCAACCGCTGCCATTCCGATATCTTGTGTCGATCCTAAGTCCAACCTCTCCCCCTCGAGCTCCTTTCGTGGCGATAACTGGTCGATGCTGCCAAATGATTCAAGGAATAAGCCAACTGATATCAATGTACCCCTACCCAGTGCTTGA | 864 | 50.69 | TGGSTPSAAEAAASQPASTPLPTAASSVPGKKKRGRPRKYGPDGSVSMALSPKPISSSVPPPVIDFSTEKKGKVRPASAVSKRKFEVDNLGDWVPCSVGANFTPHIITVNTGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDNGGTRGRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQQEQNPKKPKQDTISTASPTAAIPISCVDPKSNLSPSSSFRGDNWSMLPNDSRNKPTDINVPLPSA | 287 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 8526097 | 8529517 | - | Carg02476-RA | Car02g01272 | 143758 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car02g01272 | 287 | ProSiteProfiles | PPC domain profile profile. | 99 | 241 | IPR005175 | - | |
| Car02g01272 | 287 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Car02g01272 | 287 | MobiDBLite | consensus disorder prediction | 1 | 73 | - | - | |
| Car02g01272 | 287 | MobiDBLite | consensus disorder prediction | 221 | 243 | - | - | |
| Car02g01272 | 287 | MobiDBLite | consensus disorder prediction | 221 | 287 | - | - | |
| Car02g01272 | 287 | MobiDBLite | consensus disorder prediction | 251 | 287 | - | - | |
| Car02g01272 | 287 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 104 | 217 | IPR005175 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car02g01272 | Car-Chr2:8526097 | Car14g01784 | Car-Chr14:13966301 | 1.59E-93 | dispersed | |
| Car08g00794 | Car-Chr8:5327427 | Car02g01272 | Car-Chr2:8526097 | 3.13E-67 | dispersed | |
| Car15g01061 | Car-Chr15:8352036 | Car02g01272 | Car-Chr2:8526097 | 1.06E-160 | wgd | |
| Car16g00986 | Car-Chr16:8368895 | Car02g01272 | Car-Chr2:8526097 | 8.24E-129 | wgd | |
| Car18g01102 | Car-Chr18:11045895 | Car02g01272 | Car-Chr2:8526097 | 1.25E-76 | wgd | |
| Car02g00752 | Car-Chr2:5508278 | Car02g01272 | Car-Chr2:8526097 | 1.42E-78 | wgd | |
| Car02g01272 | Car-Chr2:8526097 | Car06g00971 | Car-Chr6:7448183 | 4.50E-89 | wgd | |
| Car02g01272 | Car-Chr2:8526097 | Car06g00668 | Car-Chr6:3979908 | 6.73E-112 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car02g01272 | - | - | csv:101210208 | 457.218 |