Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01275 ATGGATGCCCACTCTCTTCCGCCTCCTTTCCACACCCGGGATTTCCATCTCCAACAACAATACCACCACAACAGTAATTCTGAAGAAGAACACAGCGCCACCACTACTCGTCTCAAACGAGATCGCGACGATGATGACCACAACAACTCTGCCCCCACCAGCGCTGGGGACGCTGCCGCTGCTGATGGAGAGATTACTCGACGACCCAGAGGAAGACCCGCCGGATCCAAGAATAAACCCAAGCCACCAATTATTATTACTCGCGACAGTGCCAACGCCCTTCGAACTCATGTCATCGAAGTCACCGACGGCTGTGACATCGTCGACAGCGTCGCCACCTTCGCTCGCCGCCGCCAGCGCGGCGTTTGCATTATGAGTGGTACTGGCACCGTCACGAACGTCACTCTCCGCCAGCCGGCCTCCCCTGGTGCAATTGTCAACTTACATGGTCGCTTTGAGATCTTATCTCTTGCCGGCTCCTTCCTCCCTCCGCCGGCTCCTCCGGCTGCAACCAGCTTAACCATTTACCTCGCCGGCGGTCAGGGGCAGGTAGTCGGTGGTAGCGTTGTTGGTACTTTGGTCGCCTCCGGCCCCGTCGTCATCATGGCTGCCTCGTTTAGCAACGCTGCTTATGAACGCCTGCCGTTGGAAGACGACGACCAACCGCCGATGCCGCCACTGCAGGGCGGAGGCGGAATTGGGTCTCCGGATGAAGTTGGACAGTCCCAACCGCCGCAAACAGCGCATCATCAACAGCAACAACAACTTCTGGGCGACGGAAATGTGCCGTTATTTCACGGTTTGCCTCCGAATCTGTTAAACTCAATTCAAATGCCGCCATCGGAAGCAGCTTATTGGGGTACTGCTCGACCTCCATACTAA 882 56.8 MDAHSLPPPFHTRDFHLQQQYHHNSNSEEEHSATTTRLKRDRDDDDHNNSAPTSAGDAAAADGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVDSVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVNLHGRFEILSLAGSFLPPPAPPAATSLTIYLAGGQGQVVGGSVVGTLVASGPVVIMAASFSNAAYERLPLEDDDQPPMPPLQGGGGIGSPDEVGQSQPPQTAHHQQQQQLLGDGNVPLFHGLPPNLLNSIQMPPSEAAYWGTARPPY 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8548085 8548966 + Carg02473-RA Car02g01275 143761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01275 293 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 3 293 IPR014476 GO:0003680
Car02g01275 293 Gene3D - 94 221 - -
Car02g01275 293 PIRSF ESCAROLA 10 293 IPR014476 GO:0003680
Car02g01275 293 ProSiteProfiles PPC domain profile profile. 91 227 IPR005175 -
Car02g01275 293 CDD DUF296 95 162 IPR005175 -
Car02g01275 293 MobiDBLite consensus disorder prediction 1 85 - -
Car02g01275 293 MobiDBLite consensus disorder prediction 215 264 - -
Car02g01275 293 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24-RELATED 3 293 - -
Car02g01275 293 Pfam Plants and Prokaryotes Conserved (PCC) domain 95 208 IPR005175 -
Car02g01275 293 MobiDBLite consensus disorder prediction 239 259 - -
Car02g01275 293 MobiDBLite consensus disorder prediction 23 50 - -
Car02g01275 293 SUPERFAMILY AF0104/ALDC/Ptd012-like 91 223 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01275 Car-Chr2:8548085 Car08g00833 Car-Chr8:5568596 2.47E-89 dispersed
Car15g01063 Car-Chr15:8368800 Car02g01275 Car-Chr2:8548085 2.25E-150 wgd
Car16g01091 Car-Chr16:9371877 Car02g01275 Car-Chr2:8548085 9.45E-70 wgd
Car02g01275 Car-Chr2:8548085 Car06g00967 Car-Chr6:7419418 1.09E-93 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01275 - - csv:101209716 423.705