Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01297 ATGGTGAAGTTGGCTGTTGGTTCCCCCGCTGATTCCTTCAGTGCCGCCTCTCTTAAAGCTTATCTCTCTGAGTTCATCGCCACTCTCCTTTTTGTCTTCGCCGGCGTCGGCTCCGCCATCGCCTACGGTAAGTTGACGTCCGATGCGGCGTTGGATCCACCAGGTCTGGTGGCCGTGGCCGTGGCTCATGCATTTGCACTCTTCGTTGGGGTGTCGATGGCCGCGAACATCTCCGGTGGCCATCTCAACCCCGCGGTGACCTTTGGGTTGGCCATCGGCGGCAACATCACCATCTTGACCGGCTTGTTCTACTGGATCGCCCAGTCGCTTGGCTCCATTGTTGCCTGCCTCCTCCTCCAGTTCGTTACCAACGGCAAGAGCATCCCGACCCACGGTGTGGCAGCGGGATTGGGAGCAATTGAAGGTGTAGTGTTCGAGATCATAATCACCTTCGGTCTGGTGTACACAGTTTACGCTACAGCCGCAGACCCTAAAAAGGGCTCTCTTGGGACCATCGCCCCAATTGCTATTGGGTTCATAGTCGGTGCCAACATCCTTGCTGCCGGCCCATTTAGCGGTGGGTCCATGAACCCAGCCCGTTCATTCGGCCCAGCTGTTGTCAGTGGAGACTTCTCTCAAATTTGGATCTACTGGGTCGGCCCACTTATTGGTGGTGGGCTTGCTGGGCTTATCTATGGTGACGTCTTTATTGGGTCTTATGCCTCTGTTCCAGTGTCTGATGACTATGCTTAA 753 55.64 MVKLAVGSPADSFSAASLKAYLSEFIATLLFVFAGVGSAIAYGKLTSDAALDPPGLVAVAVAHAFALFVGVSMAANISGGHLNPAVTFGLAIGGNITILTGLFYWIAQSLGSIVACLLLQFVTNGKSIPTHGVAAGLGAIEGVVFEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLIGGGLAGLIYGDVFIGSYASVPVSDDYA 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8646989 8648169 - Carg02451-RA Car02g01297 143783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01297 250 Gene3D Glycerol uptake facilitator protein. 2 246 IPR023271 -
Car02g01297 250 Pfam Major intrinsic protein 14 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car02g01297 250 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Car02g01297 250 SUPERFAMILY Aquaporin-like 16 240 IPR023271 -
Car02g01297 250 TIGRFAM MIP: MIP family channel proteins 23 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car02g01297 250 PANTHER AQUAPORIN-8 1 250 IPR034294 -
Car02g01297 250 PANTHER AQUAPORIN TIP2-2-RELATED 1 250 - -
Car02g01297 250 CDD MIP 19 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car02g01297 250 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car02g01297 250 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car02g01297 250 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car02g01297 250 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car02g01297 250 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car02g01297 250 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01297 Car-Chr2:8646989 Car08g00606 Car-Chr8:3926839 1.19E-126 dispersed
Car02g01297 Car-Chr2:8646989 Car03g01082 Car-Chr3:8799843 1.73E-102 transposed
Car02g01297 Car-Chr2:8646989 Car07g00878 Car-Chr7:4717731 1.53E-102 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01297 K09873 - csv:101203925 457.218