Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01307 ATGAAGGCCAAGGAAATGCACCCTCTTTGTTGCATCTCGGTGGAGAGTTTCGGAATCGGATGCGCCGGCGATGGAGACCAGTCGACTGAGGAGGCTGCGGCGGCGGCTGCTCTCTGCAGGACCAAGAGCATGCCCGCCAGTTTAGCCGCTTTTTCCGATGGATCTCATGCGAATGTTATCAGACGGCCACCGGGATCCAAATCCACAGTCGCTGGAGTTCTTCACAAGTGGACCAATTACGGGAAAGGGTGGAGATCCAGATGGTTTCTTCTCCGTAATGGCGTGTTGTCCTACGCCAAGATTCGCCGGCCTGAGAATCTGAATCTTCTTGCTTCAAACAACGACTATCGATTGATCGGAGAGATTTCAAGCAATAGGATCCCGAGGGGAGACGAGAACGGCGGAGGGAGGAGGAAGCACCAAAAAGCGGTGGGAGTGGTTCATCTCAAGATCACATCATTTCGAGAGAGCAAGTCTGATGATCGGAGGTTTTATATCTTCACTGCTACAAAGACTCTTCATTTGAGAACTAATTCAAAGAGTGACCGAGAGGCTTGGATTCAAGCCTTGGCTTCTTCTAGTCGCAGCATATCTCCTCTAACATCGCTGAATTATAATCTCACCACCGTGCCAAGTGATTTATCGGTATCGACTGACCGACTGAAGGAGCGTTTAATTGAAGAGGGAATTGGTGAAACTCTTGTTAAGGATTGTGAACAGATAATGCTGTCCGAATTCTTGGAAATTAGAGGGCAGCTTCAAGTTCTATGTGATGAACGATCTAACTTGCTTGATACAATCAGGCAGTTAGAGTTTCCTTTTGAAGCCCTTTTCTTCTTAGCGCTCATAGTTAGTATCAATTCTTGTGTGCTTATGTATTATTGTGCTACTCATGTGACTGATATTAGACTTGACCGTGCTGCTAGTTTTGAAGCTGAAGCTTCTGGAATGAATGATGGAGAATTTCAACTGATGAAGCATGATCTTTCCTCTGAAGAACGTGGAAAATATAGTGAATGCAGCACCACGGAATCATCGGATGATATCGAGAAACGAGAGCTCGAGGAGGAGGTTTCAGACGAAGACGAAATGTCCTTTTACGACACCAGAGATTCTTTCCCTGAAAATTCTGTCTATGGCCATGATAGCAAGGCTGAAAATTCTGGCACAATGGCTGCTAACATGGAGTTACAGAACAGATACTCGCACGTTCAAAGAAGGAAACGGCTTCCCGTTCCGGTGGAGAAGGAGAAACGAGTCAGCCTTTGGTCAATGATCAAAGACAATGTGGGAAAAGATCTGACAAGAGTGTGCCTCCCTGTTTACTTCAACGAGCCAATATCATCCCTGCAGAAATGCTGTGAAGACATGGAGTATTCATATCTATTGGACCAAGCATACCAACAAGGAAAACAGGGAAATAGTCTACAAAGAATTCTGAACGTTGCAGCGTTTGCAGTTTCGGGGTATGCTTCGTCGGAAGGTAGACACTGCAAACCATTCAATCCTCTGTTGGGGGAAACCTACGAAGCCGATTTTCCAGAGAAAGGATTTCGGTTCTTCTCGGAGAAGGTGAGTCACCACCCGACTCTGATAGCGTGCCATTGCGAAGGGAGAGGGTGGAAGTTTTGGGGAGATAGCAACCTTCAGTCCAAATTCTGGGGAAGGTCAATTCAGTTGGACCCTGTAACAACAAGTATCTATAATCTCATCCTTGGGAAAGTATATTGTGATCACCATGGAACCATGCACATTCGTGGCAATAGGGACTATTCGTGCAACCTCAAGTTCAAAGAGCAATCATTTCTCGACCGAAATCCTCATCAGGTTCATGGATATGTTGAACATGTTTCTGGGAAAAAAGTTGCCACGTTGTTCGGGAAGTGGGACGATAGCATGTATTATGTAAATGGTCACGAGAATGTAAATTCAAAGAGTTGTGATGGTGGTACTTTGTTATGGAAAAGCAGTGAACCGCCGCATGATCCGACTCGATACAACTTGACTTCATTTTCAATCACTTTGAATGAGCTGACACCGGGGCTCAAGGAGATGCTCCCTCCCACGGATTCCAGACTCCGACCAGACCAACGACATCTAGAAAACGGCGAGTACGATAAAGCCAATGCCGAGAAGCTACGGTTGGAACAAAGGCAAAGAATTTCGAGGAAGTTACAAGAGAACGGGTGGAAGCCAAGATGGTTCGAGAGAGAAGGGGAAGATGGACCCTTTAGGTATGCTGGAGGATATTGGGAAGCAAGGAACGCAAGCAAATGGGATGATTGCCCAGACATATTTGGGGAATTGAATCATTAG 2316 46.11 MKAKEMHPLCCISVESFGIGCAGDGDQSTEEAAAAAALCRTKSMPASLAAFSDGSHANVIRRPPGSKSTVAGVLHKWTNYGKGWRSRWFLLRNGVLSYAKIRRPENLNLLASNNDYRLIGEISSNRIPRGDENGGGRRKHQKAVGVVHLKITSFRESKSDDRRFYIFTATKTLHLRTNSKSDREAWIQALASSSRSISPLTSLNYNLTTVPSDLSVSTDRLKERLIEEGIGETLVKDCEQIMLSEFLEIRGQLQVLCDERSNLLDTIRQLEFPFEALFFLALIVSINSCVLMYYCATHVTDIRLDRAASFEAEASGMNDGEFQLMKHDLSSEERGKYSECSTTESSDDIEKRELEEEVSDEDEMSFYDTRDSFPENSVYGHDSKAENSGTMAANMELQNRYSHVQRRKRLPVPVEKEKRVSLWSMIKDNVGKDLTRVCLPVYFNEPISSLQKCCEDMEYSYLLDQAYQQGKQGNSLQRILNVAAFAVSGYASSEGRHCKPFNPLLGETYEADFPEKGFRFFSEKVSHHPTLIACHCEGRGWKFWGDSNLQSKFWGRSIQLDPVTTSIYNLILGKVYCDHHGTMHIRGNRDYSCNLKFKEQSFLDRNPHQVHGYVEHVSGKKVATLFGKWDDSMYYVNGHENVNSKSCDGGTLLWKSSEPPHDPTRYNLTSFSITLNELTPGLKEMLPPTDSRLRPDQRHLENGEYDKANAEKLRLEQRQRISRKLQENGWKPRWFEREGEDGPFRYAGGYWEARNASKWDDCPDIFGELNH 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8697873 8703333 - Carg02441-RA Car02g01307 143793

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01307 771 Gene3D - 65 198 IPR011993 -
Car02g01307 771 SUPERFAMILY Oxysterol-binding protein-like 416 768 IPR037239 -
Car02g01307 771 SMART PH_update 68 197 IPR001849 -
Car02g01307 771 Pfam Pleckstrin homology domain 75 191 - -
Car02g01307 771 Pfam Oxysterol-binding protein 421 563 IPR000648 GO:0008289
Car02g01307 771 Pfam Oxysterol-binding protein 562 754 IPR000648 GO:0008289
Car02g01307 771 Gene3D - 507 652 - -
Car02g01307 771 MobiDBLite consensus disorder prediction 329 349 - -
Car02g01307 771 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 2A 4 271 - -
Car02g01307 771 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 2A 308 768 - -
Car02g01307 771 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 4 271 IPR000648 GO:0008289
Car02g01307 771 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 308 768 IPR000648 GO:0008289
Car02g01307 771 Gene3D - 697 760 - -
Car02g01307 771 ProSiteProfiles PH domain profile. 67 195 IPR001849 -
Car02g01307 771 MobiDBLite consensus disorder prediction 329 361 - -
Car02g01307 771 SUPERFAMILY PH domain-like 65 192 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01307 K20456 OSBP; oxysterol-binding protein 1 - csv:101216432 1246.49
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g01307 Car16g01012 CCT
Car02g01307 Car06g00687 CCT
Car02g01307 Car15g01037 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01307 Car-Chr2:8697873 Car06g00687 Car-Chr6:4109799 0 dispersed
Car02g01307 Car-Chr2:8697873 Car02g01309 Car-Chr2:8711395 1.43E-53 proximal
Car02g01307 Car-Chr2:8697873 Car02g01310 Car-Chr2:8712156 1.58E-111 proximal
Car02g01307 Car-Chr2:8697873 Car02g01308 Car-Chr2:8709366 1.06E-17 tandem
Car15g01037 Car-Chr15:8155495 Car02g01307 Car-Chr2:8697873 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g511 Blo02g01049 Blo03g00169 Bda06g00037 . Bpe05g00588 Bpe07g00165 . . Cmo06g00789 Cmo16g01114 . Cma15g01141 Car02g01307 Car15g01037 . Cpe14g00881 Cpe05g00242 Bhi11g00212 . . . . . . Cla10g00276 Cam10g0285 Cec10g0293 Cco10g0290 Clacu10g0286 Cmu10g1126 Cre10g0534 . . Cone6ag0690 Cone9ag0692 Lsi07g01319 . . Cme06g02601 . Blo19g00281 Bda07g00005 . . . Bma05g00770 . . . Cmo15g01200 Cma06g00769 Cma16g01066 Car06g00687 Car16g01012 Cpe08g00749 . Bhi12g00421 . . Lac11g2262 Hepe06g1148 . Lcy12g1808 . . . . . . . . Csa03g04675 . Cme09g01638
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000881 4 7 4 5 4 2 5 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 3 4 2 88
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car02g01307 Car_Chr02 FPKM 15.303763 18.55958 23.704941 25.240547 17.358217 14.034773 18.446003 45.745056 51.246628 54.362122