Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01327 ATGTACCACACCACAAAAACAGAGCCGGATTTTGCTTATCTTGGCCCAATTCGCCGCCATTTGTTAGGCGAATCGGACGCCGCCGGTCCCGTTTTCAACCAGACCGGTAGTTTCAGTAGCTTAATTCCATGTCTTGACGACAACTGGGGCGATTTGCCACTAAAAGTGGATGACTCTGAAGATATGCTTCTCGCTGCTGTTCTCGGGGATGCCGTCGGTGCTGGATGGGTGCCGTCGCTTGGAAGTTGCGATTTTGGGTTCTCGGCGGTGAAGTCGGAGCCGGAGATGATTCCCGTAAGTTTTCCACCGGTGCAACCCAATGTGGCGGTGAGGCCGGCGGTGGTACCGCAAAAGGGTAAGCATTACAGAGGAGTGCGGCAACGGCCGTGGGGGAAGTTTGCAGCGGAGATTCGGGACCCGGCGAAAAATGGCGCTAGAGTTTGGCTTGGAACCTATGAGACGGCGGAGGATGCAGCTCTAGCTTATGATCGAGCAGCCTACCGAATGAGAGGCTCGAGAGCTCTACTCAATTTCCCCCTCCGTGTCAACTCCGGCGAGCCCGAACCGGTTCGAATCACGTCGAAGCGATCCTCGCCGGATCTTTCGTCTTCGCCAAAGCGGCGGAAGAAGGCTACCTCCGCCGTCGAAGGTGGAGGAGTACAAGTGGCAAGCTTTACACGTGGAGGGCAGATGTTTGTCAGCCAATGCTAA 711 55.84 MYHTTKTEPDFAYLGPIRRHLLGESDAAGPVFNQTGSFSSLIPCLDDNWGDLPLKVDDSEDMLLAAVLGDAVGAGWVPSLGSCDFGFSAVKSEPEMIPVSFPPVQPNVAVRPAVVPQKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPEPVRITSKRSSPDLSSSPKRRKKATSAVEGGGVQVASFTRGGQMFVSQC 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8795070 8795780 + Carg08794-RA Car02g01327 143813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01327 236 ProSiteProfiles AP2/ERF domain profile. 121 179 IPR001471 GO:0003700|GO:0006355
Car02g01327 236 MobiDBLite consensus disorder prediction 186 220 - -
Car02g01327 236 Pfam AP2 domain 121 171 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01327 Car-Chr2:8795070 Car05g00976 Car-Chr5:9299388 1.81E-90 dispersed
Car15g01010 Car-Chr15:7890985 Car02g01327 Car-Chr2:8795070 2.56E-87 transposed
Car16g01053 Car-Chr16:9067133 Car02g01327 Car-Chr2:8795070 3.67E-93 wgd
Car02g01327 Car-Chr2:8795070 Car05g00975 Car-Chr5:9289512 1.76E-30 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3050 PF00847 AP2 8.30E-15 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01327 K09286 - csv:101221583 382.874