Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01335 ATGGGAAAACATGGACCTTGCTGTCACTGTGGAGTTACAAGCACGCCTCTTTGGCGTAATGGACCTCCTGATAAACCAGTATTATGCAACGCATGTGGATCCCGATGGAGGACGAAGGGAACGCTTGTGAACTACACCCCTTTGCATGCTCGAGCTGATCCTGATGAATATGAAAATCACAGGGTTAAGAGCATTTCAATAAATAAAAACAAAGAAGTGAAACTGCTAAAAAGACAGCTGCAACAAGCAGATGGATCGATTGGGTGGACGATTCCCGATCAAAGTCAGGGTTACTATAGAGTAGTGGATGAAGACACAAGCAATAGATCCAGTTCTGGGTCAGCCATATCTAATCCTGAGAGCTGTGCTCATTTCAGCAGTGCTGATGCAAGTGACTTGACAGGTCCAGCTCAGTCGATAGTGTGGGAGGCCATGGTGCCTTCGAGAAAGAGGACCTGTGTGAATCGTCCAAAGCAATCCCCGGTCGAGAAACTAACTAAAGATCTATATGGTATTTTATGTGAGCAGAGATCTTCCTATTTCTCTGAAGCTTCTGAGGAGGATCTGCTTTTTGAGAGTGAAAAACCTATGGTCTCTGTTGAGATAGGCCATGGAAGCATTCTCATTAGGCATCCGAGCTCAATAGCTCGAGAAGAGGAGTCTGAGGCTAGCTCGGTTTCAGTTGATAACAAGCAATACTTGGTAAATGAGGTCTATTCCCCCCATTCTGCCACTGTTCTTGTATGTAGTGAAAACAAGGGCATGAATTTTCCACCATCTAGGATTGGAAAGATGAAGAATCCTTCTGGATCAGGGGTACAACAAGTACAAATTAAAAGGGACGACTCTCATCATGAAAGTGCACAAATTCTTGGAAGCCATAACTCGCCCTTATGCGACGTAGATATAAATGACATTATAAACTTCGGAGAGTTTGTGAAACAACTTACAAATGAAGAACAGCAGCAGTTAATGAAGTATCTACCACAGATCGATATTGCTGAGCTTCCGGAGACCCTCAAGAGCATGTTTGATAGCCCCTATTTCAAGGAGAGTTTAACTTCTTTCCAACAACTACTTAGGGAGGGTCTTTTCGACGCTTCCTTCCTTGGGACTATGATCGAAGATTGCACGACTCTGAAAAGGCTTGTACTATGTAACTCTTCGAAATCCAAATGGGTCGAACGCTATCATCAACTGAAGAAACGTAAAAATGATGGCGAAGGATCTTTTCTTTCCAACGTCAACACGTCTGTGTCGAGTAACTTCATGAATGTGAAGCGATTGCGCGAGAGCTACAATCAAAATGTTCCTGAGGTAAAGACTATCATGAAGAGTCCCAAAAGGTTGGTGATGAAGGAAAATAAGGATCCTGGAGAGAATGATGGGTCTTGTTTCAGTCCTAGAAGCTTGTTTGCCTTGCCTACTGATGGAAGCTTTGAATATATACAATTCATTGAAAGAAGTTCAGATCAAGACCTATTGCTCGATGTGCGATCAAATAATTCATTCCCACAGGCCGAGCTTCTTCACCCGACCTCTCGTACGGGTGGTAGGCAGGCCAGCACATGTAGTAGCTCGGTTCACCCAAATCTTGTACATCACTAA 1608 43.72 MGKHGPCCHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLVNYTPLHARADPDEYENHRVKSISINKNKEVKLLKRQLQQADGSIGWTIPDQSQGYYRVVDEDTSNRSSSGSAISNPESCAHFSSADASDLTGPAQSIVWEAMVPSRKRTCVNRPKQSPVEKLTKDLYGILCEQRSSYFSEASEEDLLFESEKPMVSVEIGHGSILIRHPSSIAREEESEASSVSVDNKQYLVNEVYSPHSATVLVCSENKGMNFPPSRIGKMKNPSGSGVQQVQIKRDDSHHESAQILGSHNSPLCDVDINDIINFGEFVKQLTNEEQQQLMKYLPQIDIAELPETLKSMFDSPYFKESLTSFQQLLREGLFDASFLGTMIEDCTTLKRLVLCNSSKSKWVERYHQLKKRKNDGEGSFLSNVNTSVSSNFMNVKRLRESYNQNVPEVKTIMKSPKRLVMKENKDPGENDGSCFSPRSLFALPTDGSFEYIQFIERSSDQDLLLDVRSNNSFPQAELLHPTSRTGGRQASTCSSSVHPNLVHH 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8829645 8833937 + Carg08802-RA Car02g01335 143821

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01335 535 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Car02g01335 535 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Car02g01335 535 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 294 406 IPR044867 -
Car02g01335 535 Pfam Asx homology domain 282 391 IPR028020 -
Car02g01335 535 MobiDBLite consensus disorder prediction 508 535 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01335 - - - csv:101215311 948.347
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01335 Car-Chr2:8829645 Car16g00679 Car-Chr16:4315488 3.98E-08 dispersed
Car19g00289 Car-Chr19:4335425 Car02g01335 Car-Chr2:8829645 3.30E-74 transposed
Car16g01046 Car-Chr16:8977876 Car02g01335 Car-Chr2:8829645 0 wgd
Car19g00288 Car-Chr19:4332308 Car02g01335 Car-Chr2:8829645 1.43E-161 wgd
Car02g01335 Car-Chr2:8829645 Car05g00985 Car-Chr5:9390367 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car16g00679 . 59 336 C2C2-Gata Transcription Factor Family AT5G66320 51.4 1.3e-63 240.7
Car02g01335 . 1 511 C2C2-Gata Transcription Factor Family AT4G17570 52.2 3.1e-133 472.6
Car16g01046 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 52.0 7.7e-132 468.0
Car05g00985 . 5 481 C2C2-Gata Transcription Factor Family AT4G17570 52.9 1.6e-124 443.7
Car19g00289 . 47 170 C2C2-Gata Transcription Factor Family AT4G17570 66.1 1.2e-36 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001256 2 2 1 2 3 2 5 2 2 2 2 2 4 2 1 4 2 3 4 2 2 2 2 2 2 2 2 7 3 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3051 PF13919 ASXH 6.50E-09 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car02g01335 Car_Chr02 FPKM 2.958889 4.000096 3.831976 4.015327 9.477647 9.827775 9.483161 5.360019 4.290186 5.061703