Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01335 ATGGGAAAACATGGACCTTGCTGTCACTGTGGAGTTACAAGCACGCCTCTTTGGCGTAATGGACCTCCTGATAAACCAGTATTATGCAACGCATGTGGATCCCGATGGAGGACGAAGGGAACGCTTGTGAACTACACCCCTTTGCATGCTCGAGCTGATCCTGATGAATATGAAAATCACAGGGTTAAGAGCATTTCAATAAATAAAAACAAAGAAGTGAAACTGCTAAAAAGACAGCTGCAACAAGCAGATGGATCGATTGGGTGGACGATTCCCGATCAAAGTCAGGGTTACTATAGAGTAGTGGATGAAGACACAAGCAATAGATCCAGTTCTGGGTCAGCCATATCTAATCCTGAGAGCTGTGCTCATTTCAGCAGTGCTGATGCAAGTGACTTGACAGGTCCAGCTCAGTCGATAGTGTGGGAGGCCATGGTGCCTTCGAGAAAGAGGACCTGTGTGAATCGTCCAAAGCAATCCCCGGTCGAGAAACTAACTAAAGATCTATATGGTATTTTATGTGAGCAGAGATCTTCCTATTTCTCTGAAGCTTCTGAGGAGGATCTGCTTTTTGAGAGTGAAAAACCTATGGTCTCTGTTGAGATAGGCCATGGAAGCATTCTCATTAGGCATCCGAGCTCAATAGCTCGAGAAGAGGAGTCTGAGGCTAGCTCGGTTTCAGTTGATAACAAGCAATACTTGGTAAATGAGGTCTATTCCCCCCATTCTGCCACTGTTCTTGTATGTAGTGAAAACAAGGGCATGAATTTTCCACCATCTAGGATTGGAAAGATGAAGAATCCTTCTGGATCAGGGGTACAACAAGTACAAATTAAAAGGGACGACTCTCATCATGAAAGTGCACAAATTCTTGGAAGCCATAACTCGCCCTTATGCGACGTAGATATAAATGACATTATAAACTTCGGAGAGTTTGTGAAACAACTTACAAATGAAGAACAGCAGCAGTTAATGAAGTATCTACCACAGATCGATATTGCTGAGCTTCCGGAGACCCTCAAGAGCATGTTTGATAGCCCCTATTTCAAGGAGAGTTTAACTTCTTTCCAACAACTACTTAGGGAGGGTCTTTTCGACGCTTCCTTCCTTGGGACTATGATCGAAGATTGCACGACTCTGAAAAGGCTTGTACTATGTAACTCTTCGAAATCCAAATGGGTCGAACGCTATCATCAACTGAAGAAACGTAAAAATGATGGCGAAGGATCTTTTCTTTCCAACGTCAACACGTCTGTGTCGAGTAACTTCATGAATGTGAAGCGATTGCGCGAGAGCTACAATCAAAATGTTCCTGAGGTAAAGACTATCATGAAGAGTCCCAAAAGGTTGGTGATGAAGGAAAATAAGGATCCTGGAGAGAATGATGGGTCTTGTTTCAGTCCTAGAAGCTTGTTTGCCTTGCCTACTGATGGAAGCTTTGAATATATACAATTCATTGAAAGAAGTTCAGATCAAGACCTATTGCTCGATGTGCGATCAAATAATTCATTCCCACAGGCCGAGCTTCTTCACCCGACCTCTCGTACGGGTGGTAGGCAGGCCAGCACATGTAGTAGCTCGGTTCACCCAAATCTTGTACATCACTAA 1608 43.72 MGKHGPCCHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLVNYTPLHARADPDEYENHRVKSISINKNKEVKLLKRQLQQADGSIGWTIPDQSQGYYRVVDEDTSNRSSSGSAISNPESCAHFSSADASDLTGPAQSIVWEAMVPSRKRTCVNRPKQSPVEKLTKDLYGILCEQRSSYFSEASEEDLLFESEKPMVSVEIGHGSILIRHPSSIAREEESEASSVSVDNKQYLVNEVYSPHSATVLVCSENKGMNFPPSRIGKMKNPSGSGVQQVQIKRDDSHHESAQILGSHNSPLCDVDINDIINFGEFVKQLTNEEQQQLMKYLPQIDIAELPETLKSMFDSPYFKESLTSFQQLLREGLFDASFLGTMIEDCTTLKRLVLCNSSKSKWVERYHQLKKRKNDGEGSFLSNVNTSVSSNFMNVKRLRESYNQNVPEVKTIMKSPKRLVMKENKDPGENDGSCFSPRSLFALPTDGSFEYIQFIERSSDQDLLLDVRSNNSFPQAELLHPTSRTGGRQASTCSSSVHPNLVHH 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8829645 8833937 + Carg08802-RA Car02g01335 143821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01335 535 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Car02g01335 535 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Car02g01335 535 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 294 406 IPR044867 -
Car02g01335 535 Pfam Asx homology domain 282 391 IPR028020 -
Car02g01335 535 MobiDBLite consensus disorder prediction 508 535 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01335 Car-Chr2:8829645 Car16g00679 Car-Chr16:4315488 3.98E-08 dispersed
Car19g00289 Car-Chr19:4335425 Car02g01335 Car-Chr2:8829645 3.30E-74 transposed
Car16g01046 Car-Chr16:8977876 Car02g01335 Car-Chr2:8829645 0 wgd
Car19g00288 Car-Chr19:4332308 Car02g01335 Car-Chr2:8829645 1.43E-161 wgd
Car02g01335 Car-Chr2:8829645 Car05g00985 Car-Chr5:9390367 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3051 PF13919 ASXH 6.50E-09 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01335 - - csv:101215311 948.347