Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car02g01336 | ATGGAGGTGTCAGTTAAATGTGGGTTATTTGGGTGCCTCTTGGTTGTGCTCGTGCCTGCGCTGTGCTACTCTCAAGACACTTTTGTCGCCTCTAGAGCCACTTATTATGGCAGCCCTGATTGCTATGGGACACCATCTGGGGCTTGTGGATTTGGTGAATTCGGTAGGACTGTCAATAATGGGAATGTCGCTGCAGTTAGGTGCACCAATCCAACTTATTGCAGTGAGAATGGAGCCTATGTGGTGGTGACTGACCATGGTGAAGGGGATTACACTGACTTTATCATGAGCCCAAGAGCTTATGCAAATTTAGCACATCCAAACACAGCCTTAGAATTGTTCTCTAATGGTGTGGTTGATGTAGAATTCAGAAGGGTTTCATGTCGATACCCTAATTACAACACGGTCAAATTTAAGGTCCATGAGCATAGTCGATACCCCGACTACTTAGCCATTATCCTCATCTATGTGTCGGGCAAAAACGACATCTCTGCCGTTGAAGTGTGGCAGGAGGATTGCAAGGAATGGAAGGGGATGAGGAGAGCACATGGAGCTGTATGGGACATGGCAAACCCACCAAAAGGAGACCTAAAGTTGAGGTTTCAAGTGAGTGGAAGTGTAGGGTATGGAAGGTGGGTGGTGGCAAGCAATGGCCTCCCAAGCTATTGGAGGGCAGGAGTTGCTTATGACACAGATATTCACCTCTTTTAA | 711 | 47.12 | MEVSVKCGLFGCLLVVLVPALCYSQDTFVASRATYYGSPDCYGTPSGACGFGEFGRTVNNGNVAAVRCTNPTYCSENGAYVVVTDHGEGDYTDFIMSPRAYANLAHPNTALELFSNGVVDVEFRRVSCRYPNYNTVKFKVHEHSRYPDYLAIILIYVSGKNDISAVEVWQEDCKEWKGMRRAHGAVWDMANPPKGDLKLRFQVSGSVGYGRWVVASNGLPSYWRAGVAYDTDIHLF | 236 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 8837079 | 8838893 | - | Carg08803-RA | Car02g01336 | 143822 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car02g01336 | 236 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 19 | 133 | IPR007112 | - | |
| Car02g01336 | 236 | Pfam | Expansin C-terminal domain | 136 | 218 | IPR007117 | - | |
| Car02g01336 | 236 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 148 | 231 | IPR007117 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car02g01336 | Car-Chr2:8837079 | Car02g00090 | Car-Chr2:582178 | 3.84E-21 | dispersed | |
| Car19g00316 | Car-Chr19:4949367 | Car02g01336 | Car-Chr2:8837079 | 8.38E-55 | wgd | |
| Car19g00287 | Car-Chr19:4329932 | Car02g01336 | Car-Chr2:8837079 | 5.96E-154 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car02g01336 | - | - | csv:101215548 | 402.134 |