Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01343 ATGGTGGACTCCGTAGCGAAGAGAACGAGGCTGAGGCGAGCAATGGCTAGAGAGGAGCATTTGGAGCAGAGGAAGAAGCGTAGGAAGAAGAGCAGGGATTCCGCTAGTAACAATGTTCGAGGTCAATTTTCGAGCGGAGGATTTCGTGATCGAGGCAAGTGGGTTAATGCTTCTGAAAATTGTAGTGTTAATCGTCGAATGGAGGTAGAAAAAGTGGCTATAAGTGTTGATAGCGAGGAGGAGAGCGTTGAGGAGATTGATGCTGTTACGTTTGGTAGAGAAGGTGGGGATTCGGTAACATTTGTAGATTCTGAGAGTTCGGGGTTGAAGAATGTGAAAGGATTTGGTACGAAGGGGAATGTTGATGTAATCGATTTAGAGAATGAGGTGATTTTTCTTGACGAGGAGGAGGGTTTTGATTCTGTGAATTCGAACTGTTCGATTTCTAAGTCAGCTGCTGCTGCTGCGAAGGGCGGGGATTTCACTTGCCTTGATTTGGATAACGAAGATGGTAGTAGTGGCTTGATTTCATCTGGCAAGGGAAAGGGTGCTTTAGAGATATCTCCAAATAAAAGCATGGGAGAAAGTAATTGCTTGAATTCTAATGGCTTTGAGAGTGGAGGTTGCTCGTACAGCACTGAGCCCGCGTGTTGTCCTGATGATGCTGTAGATGAGTCCACTGAATCGGGAGCATCATCAAATGAAGAGGAGTCTGATGAATTGAGTGACGAGAATTATGAATTAGAAGAATCAGAAGAGTCAATTTCAGAGTCCTCTAGTAGTTCAGAAAACGAGGAAAATAATGGAAGTTACTGTGTAGATGCAGGAAGTAGAAGGGAAAGAAAGGAAAGCAGGAAAAGGATAGAAGTTATTGAAGGTGGACTAAAGAGACGTAAAGCTTATGGATTGGACATATTGGCTGATCTTAACAAGGACGGTCATAACTTTGACTACGAAAATGGAAATGTTAAGGTTCGTGAGCAGGTGAATTGTGTTGCACGAAGAACCCGTTCACGCTATGTTTGGAAGGTTAAAAAGATGAATAATGATCTTGGAACTGTCAGTCAGCCACTCTGTATTGATGAGGAAGGGTCAGACTTTGAGGGCAATGAGAAAGAAATAGCTTCTTCGTCAAGGCATGACAGTAGAGATTCTTGTGATAGTGACAATGACAGTGATAGCAATAGCGATAGTGATCGTGGTCGTGGACATGGTCGAGCTCGTGATCGTGATTGTGATTGTGATCGTGATCGTGATCGTGATCGTGGTCGTGGTCGTGGTCGTGGTCGTGGTCGTGGTCGTGGTCGAGGTTGTGATAGTGATCATGATCGTGATCGTACTGCTGATGGTGGAATTTACAAGCCAAGAGCCTGGAGTAGTGGTATTAAAAAGAGAACTCAGTTCAACAATCAAAGTGATGATGTTATCTTATCAGAAAAAAATGATGATCATACAAACAAGGTTGAGAATTTTCATGGGGGTAGTAAACTTTGGGATAGTAAAAGTTCTCCTGAAACAGATAGACACAAACGGAGTGAAGACTGTGAAGATTTTCAGAAGGTTCACCCAAAGAATTTCCATGAGTTTGATAGTATTATCAAAACAAAAGGCCACAGTGCCTGCAAAAATCTTGATGTTTTCAATATTCTTGTAGATTCCATAGTTGCAGACAAAGAACTGCCTTCAGATGATTTAGATTCTCGTACAAGTCCACTCTCCCATTGTCCTGAGATGCCTCTTCCTTTGAAGTTCAATTTTAGATTTGAGGAACCACATCTTCCAGAGAGGTTAGAGGAAGAAAAAGAAATGGATAAACTGTGGGCTGAGCTTGACTTTGCTCTCAGATCCAGCGAGATTGGTGCGGTGGATACTAATACAGTTGAAAATGAAGATGCCTTTCTTTCAAAGCTTGACCAAGCGGATCTTTGTCTTCGTGGGGATCATCAGCTGATACTTGATGAACAAATCGGACTTAGATGCACACGTTGTTCATATGTCAAATTGGAAATCAAAGATATTCTACCTTCTTTTGGTACAAATCCATCTGGAAAGTCGCACAAGAGGGAATCTGGCTCATTTGAGCATGTTAGATTTGATGACCTTCAACAGGAATTTGATCGTGACCCCCATGACATATCTGATTCACAGTATCATGCTGGACGTACAGTGTGGGATATCATTCCCGGTATAAGGGAGAGCATGTATCCACATCAGCGTGAAGGCTTTGAATTTATTTGGGAAAATATAGCTGGAGGAATTTATCTTGATGAGTTAAGAAAAATAAACGGCTTAAACAAAGGGAGTGGATGCATTGTATCACATGCTCCTGGAACAGGAAAAACTCGTCTAACAATTGTTTTTCTTCAGACATACATGGAACTAAATCCAACGTGCCGGCCTATAATTATTGCACCTAGCAGCATGCTCCTTACCTGGGAAGAGGAGTTTTTGAAATGGAAGGTTGGCATTCCCTTTCATAACCTGAACAAGCGAGATTTCACTCTCAAGGAGAATTTTTCAGCTCTTAAGTTCTTGATGCAAGCTTCTCCATCAGGACAAACTGTGGAGAATGTACGGCTTGTAAAACTGCTTTCCTGGAAAAAGGAGAAAAGCATTTTGGGAGTTAGTTACAGATTGTTTGAGAGACTTGCAGGAGTTCGGAAGAATTCCAAATGTGATAAAGTAAGGAATGTCCTTTTGGAGCTTCCTGGTCTTGTTGTCTTTGATGAAGGGCACATACCACGCAACGATGATAGTCTTATTTGGATGGCCTTGTCTAAAATTAAAACAGAAAGGCGCATCATTCTCTCCGGAACACCATTCCAGAATAATTTTACTGAGTTTTCTAATACACTAAGGTTGGCGAGGCCAAACTTTGCAGATGTATGTAAGTCTGGAGGTAATGAATGCCCAGATAAGAAGCGTGGACGCCCGAAACACATCTCAAGAGGAAAATGGGACCTTTTGATTAGTTCCATTGACAGAACTTCTGAAAACTTGCCAGAAAGTCCGGAATTGAGAGAAATCAGAGCCTTGATCAGTCCGTTTGTGCATGTATACAGGGGCAACATTCTACGAGAGAAGCTTCCGGGGTTGAGGAAATCTATAGTTATACTACGACCAGCAGAGCTGCAGAAAAGTTATCTTGAAAGCATAGTAGGGAACAATTCTTTTGAAGTGGAATATGCTGAGTCCTTGATATCCGTACACCCTTCCCTGAAACTGAAATGTGATAAAGAAGATTTTGATACCGACAAGGAAATGTTAGAGAAGGTTAGATTGAATCCTGAACTAGGAGTGAAAATACAGTTTCTCCTTGAAATTATACGTCTGAGTGAAGCTTTGAATGAAAAAGTTTTGGTTTTCAGCCAATACATTGAACCATTGTCCTTTATAGATGAGAATCTTAAGTTTCATTTTAATTGGAATGAAGGGGTAGAGGTATTTCATATGGATGGAAAGCGTGATATAAAGAAGCGACAAGCATTGATAAATACATTTAACGATCCGACAAGTGAGGTTCGGGTGTTGCTTGCATCAACAAAGGCTTGCTCAGAAGGTATAAACCTTGTTGGGGCTTCAAGGGTAGTTTTACTTGATGTTGTATGGAATCCTTCAGTGGAAAGGCAAGCTGTATGCCGTGCATTTAGACTTGGGCAGAAAAAAGTTGTTTATGTGTATCATCTCATTACCTCTGGGACAAGGGAAGAGGAAAAATACAGTCGACAAATGAAAAAAGATCGGTTGTCTGAGTTAGTTTTCTCTCCTGAACAGAGCAGTAATCAAGTAAAAGTATCATCCACAGATCTGGACGACAGAATTTTGGAAGCAGTTCTTCAACATGAAAAGCTTAAAAATATATTCGAAAGGATAGCGTACCAATCAAAGCAGTCCAGCATGAATGGGAATTTTGGCTTGGCAGACTAG 3927 41.35 MVDSVAKRTRLRRAMAREEHLEQRKKRRKKSRDSASNNVRGQFSSGGFRDRGKWVNASENCSVNRRMEVEKVAISVDSEEESVEEIDAVTFGREGGDSVTFVDSESSGLKNVKGFGTKGNVDVIDLENEVIFLDEEEGFDSVNSNCSISKSAAAAAKGGDFTCLDLDNEDGSSGLISSGKGKGALEISPNKSMGESNCLNSNGFESGGCSYSTEPACCPDDAVDESTESGASSNEEESDELSDENYELEESEESISESSSSSENEENNGSYCVDAGSRRERKESRKRIEVIEGGLKRRKAYGLDILADLNKDGHNFDYENGNVKVREQVNCVARRTRSRYVWKVKKMNNDLGTVSQPLCIDEEGSDFEGNEKEIASSSRHDSRDSCDSDNDSDSNSDSDRGRGHGRARDRDCDCDRDRDRDRGRGRGRGRGRGRGRGCDSDHDRDRTADGGIYKPRAWSSGIKKRTQFNNQSDDVILSEKNDDHTNKVENFHGGSKLWDSKSSPETDRHKRSEDCEDFQKVHPKNFHEFDSIIKTKGHSACKNLDVFNILVDSIVADKELPSDDLDSRTSPLSHCPEMPLPLKFNFRFEEPHLPERLEEEKEMDKLWAELDFALRSSEIGAVDTNTVENEDAFLSKLDQADLCLRGDHQLILDEQIGLRCTRCSYVKLEIKDILPSFGTNPSGKSHKRESGSFEHVRFDDLQQEFDRDPHDISDSQYHAGRTVWDIIPGIRESMYPHQREGFEFIWENIAGGIYLDELRKINGLNKGSGCIVSHAPGTGKTRLTIVFLQTYMELNPTCRPIIIAPSSMLLTWEEEFLKWKVGIPFHNLNKRDFTLKENFSALKFLMQASPSGQTVENVRLVKLLSWKKEKSILGVSYRLFERLAGVRKNSKCDKVRNVLLELPGLVVFDEGHIPRNDDSLIWMALSKIKTERRIILSGTPFQNNFTEFSNTLRLARPNFADVCKSGGNECPDKKRGRPKHISRGKWDLLISSIDRTSENLPESPELREIRALISPFVHVYRGNILREKLPGLRKSIVILRPAELQKSYLESIVGNNSFEVEYAESLISVHPSLKLKCDKEDFDTDKEMLEKVRLNPELGVKIQFLLEIIRLSEALNEKVLVFSQYIEPLSFIDENLKFHFNWNEGVEVFHMDGKRDIKKRQALINTFNDPTSEVRVLLASTKACSEGINLVGASRVVLLDVVWNPSVERQAVCRAFRLGQKKVVYVYHLITSGTREEEKYSRQMKKDRLSELVFSPEQSSNQVKVSSTDLDDRILEAVLQHEKLKNIFERIAYQSKQSSMNGNFGLAD 1308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8880816 8885563 - Carg08810-RA Car02g01343 143829

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01343 1308 MobiDBLite consensus disorder prediction 369 451 - -
Car02g01343 1308 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 761 958 IPR014001 -
Car02g01343 1308 MobiDBLite consensus disorder prediction 369 458 - -
Car02g01343 1308 Pfam Helicase conserved C-terminal domain 1101 1219 IPR001650 -
Car02g01343 1308 MobiDBLite consensus disorder prediction 230 256 - -
Car02g01343 1308 Pfam SNF2-related domain 764 962 IPR000330 GO:0005524|GO:0140658
Car02g01343 1308 MobiDBLite consensus disorder prediction 479 516 - -
Car02g01343 1308 MobiDBLite consensus disorder prediction 1 51 - -
Car02g01343 1308 Coils Coil 234 268 - -
Car02g01343 1308 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1107 1271 IPR001650 -
Car02g01343 1308 MobiDBLite consensus disorder prediction 220 278 - -
Car02g01343 1308 MobiDBLite consensus disorder prediction 1 22 - -
Car02g01343 1308 MobiDBLite consensus disorder prediction 501 516 - -
Car02g01343 1308 MobiDBLite consensus disorder prediction 257 271 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01343 K10875 RAD54L, RAD54; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-] - csv:105435045 1308.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01343 Car-Chr2:8880816 Car04g00121 Car-Chr4:632635 7.84E-102 dispersed
Car02g01343 Car-Chr2:8880816 Car02g00242 Car-Chr2:1638898 2.66E-85 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g573 . . . . . . . . . . Cma02g01579 . Car02g01343 . . . Cpe05g00211 . . . . . . . . . . . . . . Cone8ag0437 Cone12ag0422 . . . . Chy04g00035 . . . Bda07g00129 Bda09g00688 Bpe08g00872 Bpe11g00360 . . Sed01g4061 Cmo02g01621 Cmo19g00395 . . . . . . Bhi05g00566 Tan07g1908 Cmetu04g1824 Lac11g2350 Hepe06g1725 . . Cla09g01200 Cam09g1268 Cec09g1282 Cco09g1316 . . Cre09g1228 . Csa03g04668 . Cme04g00044
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005251 3 2 0 2 2 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 3 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3052 PF00176 SNF2_N 5.20E-17 CL0023 Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car02g01343 Car_Chr02 FPKM 48.21875 50.029911 43.560497 37.949535 42.229126 45.203423 43.981892 26.934694 29.203613 25.387146