Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01349 AGATCAAAGGAAGAAAGACAAACTGAGCCAAAAGCCAGAGTTCCATTGCAACTGGCCTCGGCTTCATCGTCTCATTCAGAAATCTCCAAATTGTTCCTTTGTTGGAAACGAAAATCAGAGATCTCTGCGGATATGGCACCGACGTCAGCTCTGGCGAAGTACAAGCTGGTCTTTCTCGGAGACCAGTCTGTTGGAAAAACCAGTATCATTACACGCTTCATGTACGACAAATTCGATAATACGTATCAGGCTACAATCGGTATCGATTTTCTCTCAAAAACTATGTATCTCGAAGATCGCACTGTTCGACTGCAGTTGTGGGACACTGCTGGACAGGAAAGATTCAGAAGTTTAATACCAAGCTATATCAGGGACTCATCTGTCGCGGTCATCGTTTATGATGTTGCAAGCCGGCAGACTTTCGTAAACACTTCGAAATGGATTGAGGAGGTGCGCACTGAGAGGGGCAGTGATGTTATTATAGTGCTTGTTGGGAACAAAACGGACCTTGTGGAGAAGAGGCAAGTCTCCGTAGAGGAAGGAGAAGCCAAAGCCCGTGAACTAAATGTCATGTTTATCGAAACAAGTGCAAAAGCTGGATTCAATATCAAGGCACTATTCCGAAAAATTGCTGCAGCATTGCCCGGAATGGAAACTCTCTCTTCGACAAAGCAAGAAGACATGGTTGATGTCAACCTGAAGTCATCAGGCAGTGGTGCTGCACAATCCCAGCCGCAGTCCGGTGGATGCGCCTGCTAG 759 46.25 RSKEERQTEPKARVPLQLASASSSHSEISKLFLCWKRKSEISADMAPTSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFVNTSKWIEEVRTERGSDVIIVLVGNKTDLVEKRQVSVEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDMVDVNLKSSGSGAAQSQPQSGGCAC 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8929864 8934517 + Carg08816-RA Car02g01349 143835

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01349 252 ProSiteProfiles small GTPase Ras family profile. 49 252 IPR001806 GO:0003924|GO:0005525
Car02g01349 252 ProSiteProfiles small GTPase Rab1 family profile. 42 252 - -
Car02g01349 252 Pfam Ras family 55 213 IPR001806 GO:0003924|GO:0005525
Car02g01349 252 ProSiteProfiles small GTPase Rho family profile. 47 220 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01349 K07893 RAB6A; Ras-related protein Rab-6A - csv:101204395 389.808
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00138 Car-Chr2:805474 Car02g01349 Car-Chr2:8929864 1.81E-15 dispersed
Car02g01349 Car-Chr2:8929864 Car03g00154 Car-Chr3:2835468 4.74E-144 dispersed
Car09g00854 Car-Chr9:5221733 Car02g01349 Car-Chr2:8929864 1.01E-14 dispersed
Car10g00533 Car-Chr10:2669188 Car02g01349 Car-Chr2:8929864 3.76E-24 dispersed
Car12g00303 Car-Chr12:1983734 Car02g01349 Car-Chr2:8929864 2.10E-26 dispersed
Car02g01349 Car-Chr2:8929864 Car03g00738 Car-Chr3:6302609 1.88E-133 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g618 . . . . . . . . . . Cma02g01585 . Car02g01349 . . . . . . . . . . . . . . . . . . Cone8ag0448 Cone12ag0437 . . . . Chy04g00049 . . . . . . . . . . Cmo02g01628 . . . . . . . . . . . . . . Cla09g01177 Cam09g1242 Cec09g1258 . . . Cre09g1206 . Csa03g04651 . Cme04g00063
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001834 3 2 2 3 3 1 4 2 1 1 1 1 1 2 2 4 1 5 3 2 2 2 2 2 2 1 2 4 3 2 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car02g01349 Car_Chr02 FPKM 0.0 0.0 0.0 0.0 4.894504 3.982526 4.210356 0.0 0.0 0.0