Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01366 ATGGCTGCTCACCTTGACCTTCTCTTTCAATACTCTTCTTCTTCTTCTTTTCTTCCTCTTTCTCAAATTACTCGAGACGGGTCGGCTCCGAACAGTTTGAGCCCTATGCAAACGCCGGACGTTGTCGACGAAGATGACTCGTGGGAAGTCAGGGCTTTCGCGGAGGACACGGCTGATGTCATGGGAACTACTTGGCCTCCTAGGTCATACACTTGCACTTTTTGTAGAAGAGAGTTCAGGTCTGCTCAAGCCCTAGGTGGTCATATGAATGTTCACCGTCGCGATCGTGCTCGGCTCCATCAAGCCCCGTCGAACGCAATCAAACCCTTTTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTACTTCGAATTCTTTCATTATCCCAGCTCATGATTTTAATGGTGGAGGGTTGTGTGTTCTCTACCCATTCCCAAACCCTTACAGCATTCGCTCACCCTCTTCTCTTTTCTCTATGTCCCATCATTCCTTCAACAACTTCATGCCCTCGACCTCGCCCGCCTCAGCCTTTCCGATTCGTAATCACCGTGCCGGAGCGAGTAGTTTCCCTCAATCCTTGAGTGATGAACAAGCCATGGAAAGTAGCAACCAAGAGGTTGATCTAGAGCTCAGGCTTGGACAAGCTCCTTCAACTCAAACTCTCATGGAAAAGAGACACAAAATCTCTAATTTTGAAGCTGCCTGTCTGAGGAAGAGATCATCAGATTGA 732 48.09 MAAHLDLLFQYSSSSSFLPLSQITRDGSAPNSLSPMQTPDVVDEDDSWEVRAFAEDTADVMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQAPSNAIKPFSSSSSSSSSSSSTSNSFIIPAHDFNGGGLCVLYPFPNPYSIRSPSSLFSMSHHSFNNFMPSTSPASAFPIRNHRAGASSFPQSLSDEQAMESSNQEVDLELRLGQAPSTQTLMEKRHKISNFEAACLRKRSSD 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9044173 9044904 - Carg08833-RA Car02g01366 143852

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01366 243 MobiDBLite consensus disorder prediction 105 122 - -
Car02g01366 243 Pfam C2H2-type zinc finger 70 94 - -
Car02g01366 243 MobiDBLite consensus disorder prediction 102 122 - -
Car02g01366 243 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 97 IPR013087 -
Car02g01366 243 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01366 - - - cmo:103503534 272.707
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01366 Car-Chr2:9044173 Car14g00099 Car-Chr14:508018 4.65E-26 dispersed
Car06g00712 Car-Chr6:4382861 Car02g01366 Car-Chr2:9044173 4.93E-38 transposed
Car19g00199 Car-Chr19:1876133 Car02g01366 Car-Chr2:9044173 1.81E-86 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g661 . . . Bda08g00626 Bpe05g00532 . Bma07g00945 . Cmo06g00876 . Cma02g01606 . Car02g01366 . . . Cpe05g00184 . . . . . . . Cla10g00172 Cam10g0171 Cec10g0180 Cco10g0180 Clacu10g0175 Cmu10g1023 Cre10g0429 . . . . . . . Cme06g02480 . . . Bda09g00708 Bpe08g00846 . Bma05g00715 . . Cmo02g01650 . Cma06g00849 . . . . . . . . . . . . . . . . . . . . Csa03g04620 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013309 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 0 1 1 1 0 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3055 PF13912 zf-C2H2_6 5.10E-06 CL0361 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car02g01366 Car_Chr02 FPKM 19.463585 19.941435 12.319193 12.954473 12.374608 12.592985 15.424016 10.870049 10.732597 12.127256