Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01373 ATGACGGACTGCCGATTACCATCGGTCATGAATTTCTGGGCGGATGAGAACGCGTCGATGATGGACGCATTTATGAGCACCGATCTGAATTCCTTTTGGGTTACGCCGCCGCAGCCACAGCAACAGCAACAGCAACTTCCTCAGCAGCCGTATGCCTCTGTTTCTGCTGCGTCGGACCCGAGTAAAGGTGTCGGTCAATCGTTACCGCCGTCGTCTATGGCGGTTTTCAACCAGGAGACTCTCCAGCAGCGCCTCCAAGCTTTGATTGAAGGCGCTCAGGAGAGCTGGACTTACGCTATCTTCTGGCAGTCTTCGTATGACTGCTCCGGCGCCACCGTCTTGGGCTGGGGCGATGGGTACTACAAAGGCGAAGAAGATAAAGGCAAAGAAAAGGCCAAATCGAGTACCTCAAAATCAGAGCAGGAGTACCGTAAGAAAGTCCTTCGCGAGCTCAATTCTCTCATTTCTGGTTCACCTACCTCTGAAGACGACGCCGTCGACGAGGTTGTCACCGATACCGAGTGGTTCTTCTTGGTGTCGATGACTCAGTCGTTCGTCTCCGGCGTCGGTTTACCGGGACAGGCGTTTTTCGACTCAAACCCTATTTGGGTTGCGGGTTCGGATCGGCTTGCGGGCTCGTTCTGTGAACGAGCCCGTCAGGGTCAGGTTTTCGGGTTGCAGACGGTGGTTTGTATTCCGTCGACGAATGGAGTCGTGGAATTGGGGTCGAGTGAGTTCATATGCCAGAGCTCCGATCTGATGAATAAGGTTAGGGTTTTGTTCAATTTCAATAATCTGGAGGTTGAAACCTGGCCAATTAGTGGTGTTGACCAAGGGGAGAATGACCCATCTTCGCTTTGGATCACTGAGCCATCAAACGCCATTGAAATTAGGGACCCTGCGACTGTGAGTAGTAACAACAACAACAACAACAACAACAATCCTGTGGCTTCCGCTCCAACTCCGACCACCACAAACAGCCAACCGGTTTCCAAAATTACATCACAGATTGAAACCCCCAAATCAAGCGTTGTTACTGAAACTCCAACCTCTGTTCCTCCTTCTCAAAATAGCCACCGACAGTCGCAGGCGGTTCAGACACAGAGCTTCTTTACCAGGGAATTGAACTTCTCTGAATTTGGGTACGATAATAGCAGCTTGAAGGATGGGAACTCACATTCTCTCAAGCCGGAATCCGGCGAGATTCTGAACTTCGGTGAGAGCAAGAGGAGTTCCTTTCCCAAAACAGATACCTTGCCTTCGGGCAGTTCCCAATTTGGAGCAGATGAGAATAAGAAGAGATCCCCTCCTTCACGTGGGAGTAACGAAGAGGGGATGCTTTCTTTTACTTCTGGTGTGATTCTTCCATCCTCAGGCGCTTTGAAATCGGGTGGTGGCATTGGCGATTCCGATCACTCCGACCTTGAAGCTTCGGTGATCCGTGAGGTGGAGAGTAGTAGAGCGGTGGAGCCAGAGAAACGGCCTCGCAAACGTGGGCGAAAGCCTGCAAATGGTAGAGAAGAACCATTGAATCACGTTGAGGCGGAGAGGCAGAGAAGAGAAAAGCTAAACCAAAGATTCTATGCTCTTCGAGCTGTGGTTCCAAATGTATCAAAAATGGACAAAGCTTCACTTCTTGGTGATGCTATCTCTTATATCAATGAGCTCAGAGGGAAGCTTCAAACTGCAGAATCAGATAAGGAGGATTTACAGAAGCAATTAGATTCAGTGAAGAAGTTGATGATGTCTAATAAAGATTCATGTATATCAACCTCAAATCAACCTCCGCCAGATGAAGACATTAAAGCATCAAACATCCATGGAAACCACAGTGGTATTGAAACCGATGTCGATGTGAAGATAATCAGTTGGGACGCAATGATCCGAATCCAATCGAGCAAGAAAAACCATCCAGCTGCACGGCTAATGGCAGCTTTAGAGGAACTGGACTTGGATATCAACCACGCTAGCATTTCAGTGGTTAATGATCTGATGATCCAACAAGCCACTGTCAAGATGAGCCGATTATACACTCAGGAGCAGCTAAGGTTAGCTATTTCGTCGAAATTAGGCGCACCTCGGTAG 2085 48.87 MTDCRLPSVMNFWADENASMMDAFMSTDLNSFWVTPPQPQQQQQQLPQQPYASVSAASDPSKGVGQSLPPSSMAVFNQETLQQRLQALIEGAQESWTYAIFWQSSYDCSGATVLGWGDGYYKGEEDKGKEKAKSSTSKSEQEYRKKVLRELNSLISGSPTSEDDAVDEVVTDTEWFFLVSMTQSFVSGVGLPGQAFFDSNPIWVAGSDRLAGSFCERARQGQVFGLQTVVCIPSTNGVVELGSSEFICQSSDLMNKVRVLFNFNNLEVETWPISGVDQGENDPSSLWITEPSNAIEIRDPATVSSNNNNNNNNNPVASAPTPTTTNSQPVSKITSQIETPKSSVVTETPTSVPPSQNSHRQSQAVQTQSFFTRELNFSEFGYDNSSLKDGNSHSLKPESGEILNFGESKRSSFPKTDTLPSGSSQFGADENKKRSPPSRGSNEEGMLSFTSGVILPSSGALKSGGGIGDSDHSDLEASVIREVESSRAVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRGKLQTAESDKEDLQKQLDSVKKLMMSNKDSCISTSNQPPPDEDIKASNIHGNHSGIETDVDVKIISWDAMIRIQSSKKNHPAARLMAALEELDLDINHASISVVNDLMIQQATVKMSRLYTQEQLRLAISSKLGAPR 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9070511 9072595 - Carg08840-RA Car02g01373 143859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01373 694 MobiDBLite consensus disorder prediction 300 367 - -
Car02g01373 694 MobiDBLite consensus disorder prediction 34 71 - -
Car02g01373 694 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 81 261 IPR025610 -
Car02g01373 694 MobiDBLite consensus disorder prediction 405 431 - -
Car02g01373 694 MobiDBLite consensus disorder prediction 124 143 - -
Car02g01373 694 MobiDBLite consensus disorder prediction 478 517 - -
Car02g01373 694 Coils Coil 553 580 - -
Car02g01373 694 PANTHER TRANSCRIPTION FACTOR MYC2 12 690 - -
Car02g01373 694 Gene3D - 499 588 IPR036638 GO:0046983
Car02g01373 694 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 510 578 IPR036638 GO:0046983
Car02g01373 694 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 507 556 IPR011598 GO:0046983
Car02g01373 694 SMART finulus 513 562 IPR011598 GO:0046983
Car02g01373 694 MobiDBLite consensus disorder prediction 405 446 - -
Car02g01373 694 CDD bHLH_AtAIB_like 504 579 - -
Car02g01373 694 MobiDBLite consensus disorder prediction 586 607 - -
Car02g01373 694 Pfam Helix-loop-helix DNA-binding domain 511 556 IPR011598 GO:0046983
Car02g01373 694 PANTHER MYC 12 690 IPR045084 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car02g01373 Car06g00579 CCT
Car02g01373 Car16g01097 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01373 Car-Chr2:9070511 Car16g01160 Car-Chr16:9904348 2.31E-19 dispersed
Car17g00395 Car-Chr17:2621599 Car02g01373 Car-Chr2:9070511 1.94E-14 dispersed
Car19g00388 Car-Chr19:5695566 Car02g01373 Car-Chr2:9070511 3.71E-18 dispersed
Car16g01097 Car-Chr16:9398140 Car02g01373 Car-Chr2:9070511 0 wgd
Car19g00192 Car-Chr19:1804983 Car02g01373 Car-Chr2:9070511 7.46E-54 wgd
Car02g01373 Car-Chr2:9070511 Car06g00579 Car-Chr6:3330995 1.66E-23 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3056 PF14215 bHLH-MYC_N 6.60E-55 CL0161 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01373 K13422 - csv:101218165 1027.31