Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01388 ATGTATGGGGATTGCCAAGTGATGTCGAGCAATATGGGAGCAAACATGGCTTCCTCTGAATCTCTCTTCTCTTCTCCCATTCAAAACCCTAATTTCAACTTCATTTCCAATTTCCACCACTTCCCTTCCATTGTTCCTAAGGAAGAAAATGGGTTGATTATGAGAGGAAAAGAAGATATGGAAAGTGGGTCTGGAAGTGAACAGCTTGTTGAAGAAAACCCAGGAATTGAAATGGAAAGTAATGATAATATTATGCAAAATCAGAAGAAAAAACGCTATCATAGGCATACTGCTCGCCAGATCCAAGAAATGGAAGCTTTGTTTAAGGAATGTCCACACCCAGATGACAAGCAGCGGCTCAAACTCAGCCAAGAACTCGGCCTCAAACCTCGCCAAGTCAAGTTTTGGTTCCAAAATCGAAGAACCCAGATGAAGGCACAACAAGACAGATCTGATAATGTGATGCTTAGGTCTGAAAATGATACCTTAAAGAATGAGAATTATAGACTGCAAACTGCCTTGAGAAACATTATATGCCCTAGCTGTGGAGGGCAAGGTATCCTTGGAGAGCCAAGCTTGGATGAACAGCAGCTTCGCCTTGAGAATGCTAGACTTAGAGAACAGTATCAGAGCCAGACATCGGATGATGTGTCAACGAGGAAGCTAAACCTCGAAAGAGGGTGGACACGAGGTGGTGTGCCACCAAGGACACTGGGTCCCGAAGGAGGGAGGATTGTAAGATCCCACATCTGTTTAGCGAAGAGGCTGAACCCTGAAAGGAGTGGACATGAGGCAATGTGTCAACAAGGATGCTGGGCCCTGAATGGGGCTGGATTATACACTGGTCGCCCACTCCAAGGGATGTCCTCCACAGCTCCCCCTCTTATGCAGCCATCTCTTGATTTGGACATGAACATATACTCAAGGCAATACACAGAGGCCATGGTATCGTCCTCCGAAATGATGCCACTGGCGTCGATGCTCCCGCCCGACGCCGCTCACTTCCCAGAAGGCGGTCTATTAATCGAGGAGGAAAAAACATTAGCTATGGATCTCGCTATATCGTCCATGGCTGAACTCGTGAAGATGTGCCGCTTAACCGAGCCACTTTGGATTCGAAACAGCGAGAGCGGTAAGGAAGTTCTAAATGTAGAAGAACATGCCAGGATGTTTCCATGGCCAATGAACCTGAAACAACACTTGATGAATGAGTTTAGAACCGAAGCCACTCGTGATAGCGCCGTTGTTATAATGAACAGCATCACCCTCGTCGACGCCTTTCTCGACGCGAACAAATGGATGGAGTTATTCCCTTCACTCGTGGCCAAAGCAAAAACTGTGCAAATCATTTCATCAAGTGTTTCAGGCCATGCAAGCGGCTCCCTTCGATTGATGTATGCAGAACTTCAAGCTCTTTCTCCATTAATTCCGACGAGGGAAGCCCATTTCCTCCGGTGCTGCCAGCAGAACGCCGATGAAGGCAGCTGGGCAATTGTTGATTTTCCGATCGACAGCTTTCACGACAGCCTCCAACATTCGTTCCCCAGATACAGGAGAAGGCCGTCCGGCTGCATTATCCAAGACATGCCCAACGGATATTCAAGGGTTACGTGGGTGGAGCACGCGGAGATAGAAGAGAAGCCAATCCATCAAATATTCAATAATTTTGTTCATAGTGGAATGGCTTTTGGGGCGCATCGCTGGTTGGCTATTTTACAAAGGCAATGCGAGAGAATTGCAAGCCTCATGGCTCGAAACATTTCTGATCTTGGAGTGATACCTTCGCCAGAAGCAAGACAGAACTTAATGAAATTGGCACAAAGAATGACCAGAACTTTCTCACTTAACATAAGCACCTCCGGTGGCCAGTCGTGGACCGCGTTGTCCGATTCTCCTGATGATACTGTTCGTATAACGACCCGAAAAATCGTCGAGCCTGGCCAACCTAATGGGGTTATTCTTAGTGCTGTCTCCACCACTTGGCTTCCCTATCCTCATTACCGTGTCTTCGATCTTCTTCGAGATGAACGACAACGATCCCAGCTGGAGGTTACTTCCAATGGGAATTCACTGCACGAGGTTGCTCATATTGCTAATGGCTCCCACCCTGGAAACTGCATATCTCTGCTTCGTATCAATGTGGCCAGCAATTTCTCCCAGCATGTTGAGCTGATGCTGCAGGAGAGCTGCACGGACCAGTCCGGCAGCCTCGTCGTCTTCGCTACGATTGACGTCGATTCGATTCAGTTAGCCATGAGTGGAGAAGACTCCTCCAGCATTCCCCTCCTCCCCATAGGATTTTCCATCGTCCCCGTTGTCGATTCGACTGCCGATGGACGCCTAGCATCATCGCCACCCAAGGACGGTGCTACTAATGCTGCAGTTGTCAACTCCGGCTGCTTACTTACCGTTGGCCTGCAGGTTCTAGCCAGCACCATTCCATCGGCGAAGCTCAACCTGTCTAGTGTAACCGCCATCAACAACCAGCTCTGTAACACGCTCCACCAAATTAACGCTGCTCTAGGCTGCAGCTCAACTCAGCTCGAGAATGCCAATGCCGCTGTCGAACAGAATACTGCACTGCCGCTGCCGACACAACCGCCACCCAAGCAATAA 2616 48.7 MYGDCQVMSSNMGANMASSESLFSSPIQNPNFNFISNFHHFPSIVPKEENGLIMRGKEDMESGSGSEQLVEENPGIEMESNDNIMQNQKKKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMKAQQDRSDNVMLRSENDTLKNENYRLQTALRNIICPSCGGQGILGEPSLDEQQLRLENARLREQYQSQTSDDVSTRKLNLERGWTRGGVPPRTLGPEGGRIVRSHICLAKRLNPERSGHEAMCQQGCWALNGAGLYTGRPLQGMSSTAPPLMQPSLDLDMNIYSRQYTEAMVSSSEMMPLASMLPPDAAHFPEGGLLIEEEKTLAMDLAISSMAELVKMCRLTEPLWIRNSESGKEVLNVEEHARMFPWPMNLKQHLMNEFRTEATRDSAVVIMNSITLVDAFLDANKWMELFPSLVAKAKTVQIISSSVSGHASGSLRLMYAELQALSPLIPTREAHFLRCCQQNADEGSWAIVDFPIDSFHDSLQHSFPRYRRRPSGCIIQDMPNGYSRVTWVEHAEIEEKPIHQIFNNFVHSGMAFGAHRWLAILQRQCERIASLMARNISDLGVIPSPEARQNLMKLAQRMTRTFSLNISTSGGQSWTALSDSPDDTVRITTRKIVEPGQPNGVILSAVSTTWLPYPHYRVFDLLRDERQRSQLEVTSNGNSLHEVAHIANGSHPGNCISLLRINVASNFSQHVELMLQESCTDQSGSLVVFATIDVDSIQLAMSGEDSSSIPLLPIGFSIVPVVDSTADGRLASSPPKDGATNAAVVNSGCLLTVGLQVLASTIPSAKLNLSSVTAINNQLCNTLHQINAALGCSSTQLENANAAVEQNTALPLPTQPPPKQ 871
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9122699 9128125 + Carg08855-RA Car02g01388 143874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01388 871 ProSitePatterns 'Homeobox' domain signature. 122 145 IPR017970 GO:0000981|GO:0006355
Car02g01388 871 ProSiteProfiles 'Homeobox' domain profile. 87 147 IPR001356 GO:0003677
Car02g01388 871 Coils Coil 195 215 - -
Car02g01388 871 Pfam Homeodomain 90 145 IPR001356 GO:0003677
Car02g01388 871 Pfam START domain 352 578 IPR002913 GO:0008289
Car02g01388 871 ProSiteProfiles START domain profile. 342 581 IPR002913 GO:0008289
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01388 Car-Chr2:9122699 Car01g00693 Car-Chr1:4139304 0 dispersed
Car19g00175 Car-Chr19:1586106 Car02g01388 Car-Chr2:9122699 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3061 PF01852 START 1.50E-41 CL0209 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01388 - - mcha:111026034 1273.07