Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01391 ATGGAGCTATTCCCTGCACAGCCGGATTTGTCGCTCCAAATTAGCCCTCCCAATACAAATAAACCCTCTTCCACTTGGAGAACAACAGCACCCTCTCAAGAACATCTTGATTTGGGGTTTTGGAATAATCTCAATTTGGAGTCTGCTAAACCCACTCCCAAACATCACCCTACTAATCAACACTTTGATCTCTCCCTTTCCAACTTCACTCAAATTAACCAATACTCCAATATTCCTCCTCCTCCGCCTCCTCCTCTTCCTCACCACCACCACCACCCTGCCTTCCACGGCGGCGCTCACCTCTTCCAAACCCTACACAAAACCCACCACCCACCCACCATTTTCCACCACACTCCTCCGCCACCACCCACCACATCGCACCCTTTTCCAGGACAGAACAATGTTCAAGACTTGGCCTTTTTGCGACCCATTAGAGGAATTCCGGTGTACCATCAGACAACTAACCCCGCCGGCACTCCCTCCCCCATCGCTCCCTCCGCCAGCGGCCACGGCCAGATAATGATGCGATCCAGATTCTTGTCTAGGTTTCCGGCCAAACGCAGCATGAGAGCCCCAAGGATGCGATGGACTTCCACTCTCCATGCTCGCTTTGTTCATGCTGTTGAACTCCTCGGCGGCCATGAAAGAGCGACGCCCAAGTCGGTTCTCGAGCTTATGGATGTCAAAGATCTAACCTTAGCCCATGTCAAATCTCATTTACAGTTCTATATAAAGTATAACACAATGAATATGTACAACAGGGCAATCAGCACTATATTATACGAGAATGCTTCATCAGGGGACACGAGCAATATTGAAGATATAATATTTGACATTCAAAAGCCAAGCATGGGAAGGCAAAATGAGCACTCAGTTCAACAAAATAGGCAAAACCCTCATCAAGATAAGGATTATCATGCCCTCTGGAGCAATTCTTCCAGGGAAGCTTGGTTGCATGGTTTTCCTAATGATTCTTCTAGGGACCTTTCATCGTCCCTCGAGAATGACGTGGATCCAAAGAGCTCAAACAACGAAAGACTATCGGAGATAAGCTCGTCGGGGAATCTTCCTCAGAAACCTAATTTGGAATTCACATTAGGAAGGGCAGTTTGA 1113 47.8 MELFPAQPDLSLQISPPNTNKPSSTWRTTAPSQEHLDLGFWNNLNLESAKPTPKHHPTNQHFDLSLSNFTQINQYSNIPPPPPPPLPHHHHHPAFHGGAHLFQTLHKTHHPPTIFHHTPPPPPTTSHPFPGQNNVQDLAFLRPIRGIPVYHQTTNPAGTPSPIAPSASGHGQIMMRSRFLSRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQFYIKYNTMNMYNRAISTILYENASSGDTSNIEDIIFDIQKPSMGRQNEHSVQQNRQNPHQDKDYHALWSNSSREAWLHGFPNDSSRDLSSSLENDVDPKSSNNERLSEISSSGNLPQKPNLEFTLGRAV 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9146192 9149786 + Carg08858-RA Car02g01391 143877

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01391 370 MobiDBLite consensus disorder prediction 11 29 - -
Car02g01391 370 MobiDBLite consensus disorder prediction 114 128 - -
Car02g01391 370 MobiDBLite consensus disorder prediction 72 96 - -
Car02g01391 370 MobiDBLite consensus disorder prediction 344 360 - -
Car02g01391 370 MobiDBLite consensus disorder prediction 110 133 - -
Car02g01391 370 MobiDBLite consensus disorder prediction 328 370 - -
Car02g01391 370 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01391 - - - bhj:120077162 495.352
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g01391 Car06g00565 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01391 Car-Chr2:9146192 Car13g00809 Car-Chr13:8878771 3.18E-31 dispersed
Car14g00796 Car-Chr14:4653402 Car02g01391 Car-Chr2:9146192 7.27E-20 dispersed
Car16g01117 Car-Chr16:9609693 Car02g01391 Car-Chr2:9146192 3.14E-68 wgd
Car19g00172 Car-Chr19:1554049 Car02g01391 Car-Chr2:9146192 2.97E-141 wgd
Car02g01391 Car-Chr2:9146192 Car06g00565 Car-Chr6:3216703 3.85E-65 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g717 . . . . . . . . Cmo06g00638 . Cma02g01632 . Car02g01391 . . . . . . . . . . . Cla10g00132 Cam10g0130 Cec10g0139 Cco10g0139 Clacu10g0135 Cmu10g0982 Cre10g0392 . . . . . . Chy04g00122 . . Blo19g00245 . . . . . . . Cmo02g01676 Cmo19g00231 Cma06g00631 . Car06g00565 . . Cpe15g00191 . . . . . . . . . . . . . . . . . Cme04g00145
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001608 1 1 2 1 2 2 4 2 2 2 2 2 4 3 2 5 2 2 4 2 2 2 2 2 2 2 2 6 2 2 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3063 None None None None Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car02g01391 Car_Chr02 FPKM 10.29166 8.981025 6.409569 8.033788 13.350202 11.624135 12.460118 7.750258 10.250175 10.120749