Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01399 ATGCAGCCCATTATGCCCCCTTATGGTACCCCTCCACATCCCTATGTTGCAATGTATCCCCATGGTGGCATCTATGCTCATCCACCTATTCCTCCGGGATCATATCCTTACAGTCCTTTTGCTATAGCTTCTCCAAATGGAATTGCTGAGGCTTCTGGTAATACACCAGGCAACATGGAAGGGGATGGTAAGCCCTCTGAGCTGAAAGAAAAGTTGCCAATTAAAAGATCGAAAGGAAGTCTGGGAAGTTTAAACATGATCACTGGGAAGAACAACGAGCTTGGTAAACCATCAGGAGCATCTGCTAATGGAGTTTATTCTAAAAGCGCTGAAAGTGAAAGTGAAGGTTCAAGCGAAAGAAGTGATGCTGACTCTCAAAATGATTCACAACTAAAATCTGGATCTGGGAAAGATTCTTTAGAAGGTGGAGGGACTCCTAATGGTTTAATGCATGGTTCTCAGAATGAAGGACATAGTCTCGCTCATCCATTGGTGAACCAAACAATGTCCATAATACCAATTCAAGCTTCTGGAGCTGTTTCAGGTCCTGCTACAAATTTGAATATAGGAATGGATTATTGGGGTACTCCTACAACTTCTGCCATCCCTTCATTGGGTGGGAAGGTCCCTTCCGCTCCAGTTGTGGGAGCTGCTGCTGCTGGGTCACGGGACAGCATTCAGTCACAGATGTGGTTACAGGATGAAAGAGAGCTAAAAAGGCAAAAAAGGAAGCAGTCAAACAGAGAATCTGCTCGTAGGTCTCGGTTGCGTAAACAGGCTGAATGCGACGAGCTTTCTCATCGTGCCGAAGCTTTGAACGAAGAAAATGCGAGTCTTAGGTCCGAAGTGGATAGGATTAGGAGTGAGTACGAGCAACTTCTTTCAGAGAATGCTTCTCTCAAGAGGAGGCTTGGAGAAAGTGATGGAAAAGAAGATCCAAGAGCCACCAAAGATGGCCAAAATGTGAATAAAGAACCTCAGCGTACATCCCGGACCGAGTTCACCAAGGGGTAG 1014 45.66 MQPIMPPYGTPPHPYVAMYPHGGIYAHPPIPPGSYPYSPFAIASPNGIAEASGNTPGNMEGDGKPSELKEKLPIKRSKGSLGSLNMITGKNNELGKPSGASANGVYSKSAESESEGSSERSDADSQNDSQLKSGSGKDSLEGGGTPNGLMHGSQNEGHSLAHPLVNQTMSIIPIQASGAVSGPATNLNIGMDYWGTPTTSAIPSLGGKVPSAPVVGAAAAGSRDSIQSQMWLQDERELKRQKRKQSNRESARRSRLRKQAECDELSHRAEALNEENASLRSEVDRIRSEYEQLLSENASLKRRLGESDGKEDPRATKDGQNVNKEPQRTSRTEFTKG 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9195983 9201102 - Carg08866-RA Car02g01399 143885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01399 337 Pfam bZIP transcription factor 235 297 IPR004827 GO:0003700|GO:0006355
Car02g01399 337 MobiDBLite consensus disorder prediction 48 159 - -
Car02g01399 337 Coils Coil 255 303 - -
Car02g01399 337 Pfam G-box binding protein MFMR 2 31 IPR012900 -
Car02g01399 337 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 237 300 IPR004827 GO:0003700|GO:0006355
Car02g01399 337 MobiDBLite consensus disorder prediction 294 337 - -
Car02g01399 337 MobiDBLite consensus disorder prediction 220 262 - -
Car02g01399 337 Pfam Disordered region downstream of MFMR 70 203 - -
Car02g01399 337 MobiDBLite consensus disorder prediction 301 321 - -
Car02g01399 337 MobiDBLite consensus disorder prediction 81 112 - -
Car02g01399 337 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 242 257 IPR004827 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car02g01399 Car06g00559 CCT
Car02g01399 Car16g01124 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01399 Car-Chr2:9195983 Car03g00698 Car-Chr3:6103484 5.37E-53 dispersed
Car16g01124 Car-Chr16:9650808 Car02g01399 Car-Chr2:9195983 2.64E-142 wgd
Car02g01399 Car-Chr2:9195983 Car06g00559 Car-Chr6:3160924 6.05E-162 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3064 PF16596 MFMR_assoc 5.40E-49 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01399 K09060 - csv:101214217 578.941