Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01484 ATGAAGAGTGATGTTAAGATAAAATGGCGGCGGAGAGCTGGAAAAGGGGAGAACATTAGGAAGATAATGAAGTGTTTATGTTCTGGAGAGAAAAGAGCTGGTGATGATATGATTCCTGCATCAGAATTGCAGTCGACTTTGGAGAATTCAGCAAGCGAACACTCCTCACGAATCGGTGAGATTGTCATGAAGCCAGAAATTGGCAATATAGAAGAAGCCGAGTCTTCGCTTCGTGAGAGCGGTTGCTTGAATTATGAGGAAGCAAGAGCATTGCTGGGAAGATATGAATATCAAAAAGGAAACATTGAAGCTGCTCTTCATGTATTTGAAGGAATAGATATCACTGCAGTAACTAGTAAGATAATGCTCTCCATTGCTAGAACAGGACACCGTCCAAGGAGACGATCGCAACGTTTTAGTGACCCACCATTGTCTATGCATGCTGTCAGTTTACTGTTGGAAGCCATCTTTTTAAAAGCAAAATCATTGCAAGGCCTTGGGAGGTTTGGAGAAGCTGCTCAATCTTGCAAAGTTATTCTGGACATACTTGAATCTTCATTTCCCGAAGGGTTGCCTGAAAACTTCGGTGCTGATTGTAAATTGCAGGACACAGTAACGAAAGCCGTTGAGCTGATACCAGAACTATGGAAACAAGGCGATTCTTCTCAAGAAGCGATCCTTTCATATCGGCGGGCACTCCTTCATCAATGGAACCTCGATGCGGGAACCACCGCTCGAATTCAGAAAGAGTTTGCCATTTTTCTTCTGTACAGTGGAAATGAAGCTTACCCTCCAAATCTCCGGTCTCAAATGGACAGCTCATTTGTACCAAAAAACAATTATGAAGAAGCTATACTCTTATTTATGATACTACTTAGAAAAGTTGTTCTTAAGAGGATTGATTGGGATCCATCAATCTTGGATCACCTCTCCTTTGCACTAACAATATCAGGGGATACTAGCGCTTTGGCAGGTCAAGTAGAGGAATTGCCTCCTGGGATTCTACATCGAAACGATAGGTACCATACTCTCGCTCTTTGTTACTATGGAGCTGGAGAAAACTTGGCTGCTTTGAATCTTCTGAGGAAATTGTTGGGCAGTCATGAGGATCCTAAATCTCTTCCTGCTTTATTAATGGCGTCAAAGATTTGTGGAGAGCACAGTGATCATGCTGAAGAAGGAACACGTTATGCTCGTCGAGCTCTTCAAAACTTGGATGCTGGATGTGATCAATTGATAGGTGTTGCCAACTGTTTGTTGGGTGTCTCTCTGTCTGTATATTCTAAGTCAGCAGTTGTAGATTCTGAGCGGTCCTCCAGACAATCTGAGGCAATAGAGGCCCTGGAAGCTGCACGGAAGAAGACTCGAATGACCGATCCTAATGTTCTCTACCATTTGAGTGTTGAATATGCTGATGAGAGGAAGTTGGATTCAGCACTTCATTTTGCAAAAAAGTGTCTCAAACTGGAAGGTGGATCTAATATTAGAACTTGGTTACTGGTGGCTCGGATTCTCTCTGCCCTGAAACGATTCGTGGATAGTGAAGGTATTATAAATGCAGCTCTGGAGCAGACTGGGAAATGGGATCAAGGCGAATTGCTTCGAACAAAAGCAAAGCTTCTGATAGCACAAGATGAGCTGAAAGGTGCTATTGGGACTTATACTCAGTTACTCGCCGTTTTTCAAGTTCAGAGTAAAAGTTTTGGCTTGGGAGATAAGAAGCTACATAAGAACAGCAGAAATTGCATCAGAAGCTTGCAATTGGAAGTGTGGCATGATTTAGCTCTAGTCTATATAAGGCTTTCACAATGGCACAATGCCGAGGCTTGCCTTTCCAAGTCAAAGGCCATCCATTCTCATTCGGCATCTAGATGTCATCTCACAGGTATGCTTTATGAAGCAAAAGGATTGTATAAAGAAGCTTTGAAAGCTTTTATGGCTGCTCTGGACATTGATCCCGTTCATGTCCCGAGCTTGGTTTCGTCTGCCGTAGTTATCAGACGTCTTGGCCACCAATCGCACCCCGTTGTTCGCAGCTTTTTGATGGATGCTGTACGTCTCAACCAGACAAACCACGGTGCGTGGTACAATCTCGGGCTATTCTACAGAGCTGAAGGAACCAAATCTTCATTGGCTGAAGCTGTTGAATGTTTTGAGGCTGCAACATTTCTTGAAGAGACTGCTCCTGTTGAACCCTTCAGATAA 2205 43.4 MKSDVKIKWRRRAGKGENIRKIMKCLCSGEKRAGDDMIPASELQSTLENSASEHSSRIGEIVMKPEIGNIEEAESSLRESGCLNYEEARALLGRYEYQKGNIEAALHVFEGIDITAVTSKIMLSIARTGHRPRRRSQRFSDPPLSMHAVSLLLEAIFLKAKSLQGLGRFGEAAQSCKVILDILESSFPEGLPENFGADCKLQDTVTKAVELIPELWKQGDSSQEAILSYRRALLHQWNLDAGTTARIQKEFAIFLLYSGNEAYPPNLRSQMDSSFVPKNNYEEAILLFMILLRKVVLKRIDWDPSILDHLSFALTISGDTSALAGQVEELPPGILHRNDRYHTLALCYYGAGENLAALNLLRKLLGSHEDPKSLPALLMASKICGEHSDHAEEGTRYARRALQNLDAGCDQLIGVANCLLGVSLSVYSKSAVVDSERSSRQSEAIEALEAARKKTRMTDPNVLYHLSVEYADERKLDSALHFAKKCLKLEGGSNIRTWLLVARILSALKRFVDSEGIINAALEQTGKWDQGELLRTKAKLLIAQDELKGAIGTYTQLLAVFQVQSKSFGLGDKKLHKNSRNCIRSLQLEVWHDLALVYIRLSQWHNAEACLSKSKAIHSHSASRCHLTGMLYEAKGLYKEALKAFMAALDIDPVHVPSLVSSAVVIRRLGHQSHPVVRSFLMDAVRLNQTNHGAWYNLGLFYRAEGTKSSLAEAVECFEAATFLEETAPVEPFR 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9646193 9650503 - Carg08952-RA Car02g01484 143970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01484 734 Pfam Tetratricopeptide repeat 624 654 IPR019734 GO:0005515
Car02g01484 734 ProSiteProfiles TPR repeat profile. 622 655 IPR019734 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01137 Car-Chr1:10528698 Car02g01484 Car-Chr2:9646193 0 dispersed
Car02g01484 Car-Chr2:9646193 Car09g00635 Car-Chr9:3688738 0 dispersed
Car05g00118 Car-Chr5:607238 Car02g01484 Car-Chr2:9646193 0 transposed
Car14g01640 Car-Chr14:13139630 Car02g01484 Car-Chr2:9646193 0 wgd
Car19g00082 Car-Chr19:705867 Car02g01484 Car-Chr2:9646193 0 wgd
Car02g01484 Car-Chr2:9646193 Car06g01121 Car-Chr6:8376873 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01484 K21843 - csv:101223229 1222.22