Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01504 ATGACAGGCTCTGGTTCTCCATGTGGAGCCTGCAAGTTCTTGAGAAGAAAATGTGTCAGAGGGTGTGTTTTTGCTCCTTACTTCTGCCATGAACAAGGAGCCTCTCACTTTGCCGCCATTCATAAGGTGTTTGGAGCCAGCAATGTGTCTAAGCTTCTTGCTCGCCTCCCTGTTACTGAGCGCTGTGAGGCTGCTGTTACCATCTCTTATGAAGCTCAAGCTCGCCTTCAAGATCCCATCTATGGCTGCGTTTCTCACATCTTTGCCCTTCAACAACAGGTTGTGAGTCTTCAGGCACAGCTTGCTTCTCTGAAGGAGCAAGCAGCAGAGAGCATGATGAACGGCTCAAGTAACAACGGGGGTGGGGTGAATGAGAAGAATTGCAGAAAGATTCCATCTCATTTCCAAGATCTCCATAACTGGTTTCAATCGGATCATTCGAACGTAACGCCTGGATTCAACCCGAACCCGACTCAAGATTCAGCATCCAACCCTTATTATGATGAGAACTATCGCATTATGATCAATTCCCAATCCAATGGGAACTATGAACATCACATGGCAAAAATGGAGGAAAGTGGATCATATGGAAGCTTTGAAGAAACCTCAGACTATTCCATGTATACTCTTGATCATCTGCATTCAAATGTTCAACAATGGAGCTTCAATGAGTCGCCTGATGATTTACAATCAGTCGCTTTTGGTCATGCTCGACGTTGGTAA 723 45.5 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGASHFAAIHKVFGASNVSKLLARLPVTERCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVSLQAQLASLKEQAAESMMNGSSNNGGGVNEKNCRKIPSHFQDLHNWFQSDHSNVTPGFNPNPTQDSASNPYYDENYRIMINSQSNGNYEHHMAKMEESGSYGSFEETSDYSMYTLDHLHSNVQQWSFNESPDDLQSVAFGHARRW 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9741088 9741906 + Carg08972-RA Car02g01504 143990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01504 240 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Car02g01504 240 Coils Coil 87 114 - -
Car02g01504 240 Pfam Lateral organ boundaries (LOB) domain 7 105 IPR004883 -
Car02g01504 240 PANTHER LOB DOMAIN-CONTAINING PROTEIN-RELATED 1 238 - -
Car02g01504 240 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 238 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01504 Car-Chr2:9741088 Car19g00061 Car-Chr19:528051 5.26E-153 dispersed
Car02g01504 Car-Chr2:9741088 Car02g01505 Car-Chr2:9742642 8.27E-51 tandem
Car08g00248 Car-Chr8:1580902 Car02g01504 Car-Chr2:9741088 6.58E-59 transposed
Car19g00060 Car-Chr19:522150 Car02g01504 Car-Chr2:9741088 7.13E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3074 PF03195 LOB 6.40E-36 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01504 K13945 - csv:101214764 395.201