Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00044 AAAACACCAAAATCCGACATGGGAAGAGGCAGAGTAGAGATCAAGAAGATTGAGAATATCAACAGCCGACAAGTTACATTCTCCAAACGCCGTAATGGGTTGATGAAAAAGGCCAAAGAATTGTCGGTTCTTTGTGATGCAGAGGTCGCCATTGTTGTCTTCTCCAGCACTGGAAGACTTTATGAATTCTCCAGTACTAGCATGGAACATACACTTTCAAGGTACAGAGGACAGGGCATGGAGTTGGATTTTCCAAGAGAGACTTTGGACCATCCAACACAAGTGCCACCATCGGATTCTGATGCGAAATCATCCGAAGACGAGTTCGTAAAGCTGAAGTTAACGTACATGCAGATGAGAGGGCAAGAACTGGATAGTTTGAGCTTTAGAGAGCTACAAAACTTAGAAAATCAGTTGCGGGAAGGGATCGTGTCGATCAAAGACAAGAAGGAGTCATTGCTTTTGGAGCAGCTCCAAAGGTGTAGGTCACAGGATTCGAAAACCGCTTCTACCAACGAGACTGAGGCCGAGACCGAGGCTGAGGAGAATGACTGCTCGGAAATTTCCTTGCATCTGGGGTTGTCGTTGGATGGTCGACAAAACAGGAAACGATCGGTTGAAGGCACGAGCAATGACACAGCAGGCAGCTAA 651 46.39 KTPKSDMGRGRVEIKKIENINSRQVTFSKRRNGLMKKAKELSVLCDAEVAIVVFSSTGRLYEFSSTSMEHTLSRYRGQGMELDFPRETLDHPTQVPPSDSDAKSSEDEFVKLKLTYMQMRGQELDSLSFRELQNLENQLREGIVSIKDKKESLLLEQLQRCRSQDSKTASTNETEAETEAEENDCSEISLHLGLSLDGRQNRKRSVEGTSNDTAGS 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 525038 530780 + Carg24986-RA Car03g00044 144096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00044 216 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 63 IPR002100 GO:0003677|GO:0046983
Car03g00044 216 ProSiteProfiles MADS-box domain profile. 7 67 IPR002100 GO:0003677|GO:0046983
Car03g00044 216 Coils Coil 132 152 - -
Car03g00044 216 MobiDBLite consensus disorder prediction 161 216 - -
Car03g00044 216 Pfam K-box region 107 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car03g00044 216 ProSiteProfiles K-box domain profile. 95 202 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car03g00044 216 ProSitePatterns MADS-box domain signature. 9 63 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00216 Car-Chr1:1170227 Car03g00044 Car-Chr3:525038 3.17E-50 dispersed
Car03g00044 Car-Chr3:525038 Car14g01800 Car-Chr14:14086186 1.72E-37 dispersed
Car03g00044 Car-Chr3:525038 Car07g00131 Car-Chr7:809346 1.69E-39 transposed
Car03g00044 Car-Chr3:525038 Car03g01215 Car-Chr3:9481463 1.07E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3087 PF01486 K-box 4.50E-12 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00044 - - cmax:111467266 353.599