Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00064 ATGGGAACCCCGGAATTCCCTAATCTCGGGAAGCATTGCAACTTGGAAGATTGTAAGCAGATCGATTTCTTGCCCTTTACTTGCGATTGCTGTCGCCAGGTCTTTTGTTTGGAGCATCGTAGTTACAATAGACATAGTTGTCCGAAAGCAGATAGACGGGATGTCACCGTCGTCATTTGTCCGCTGTGTGCCAAAGGAGTTCGTCTCGTCCCAGATCAAGATCCCAACATTACATGGGAGATACATGTTAACACTGAATGTGACCCTTCAAATTATGAAAAAGTCACAAAGAAGAAAAAATGCCCTGTACCTGGCTGTAGGGAGTCGTTAACGTTTTCAAACACGATCAAGTGTCGGGACTGCTCGGTAGACCATTGTTTGAAACACCGTTTTGGTCTCGACCATAAGTGTCCTGGTCCGAAAAAACCCGAACCAGCAGGCTTTCCTTTTGTTGGTGTTTTAAGTAGAAGTAAACAAGAAGAGAATGGACCTAAGAAAGCATTGCCTAACACAGCTTCCTCTAATTGGACAACAGCCCTCCTTAATGTAGCCTCGTCTTTTAAAGCCTCATGGAAAGCAACAGGCAACAACAGCAATGGAAATGGACATGTTGAGCAATGTCCACAATGCAGTGCTAAGTTTTCGATGGTTTCGTCTCTAGTCGAGCATGTAAAAAAAGTCCATGAAAGCGGTGTCAATCGACCTGGGGCGAAGAAGAAAATCCTATTGCCCTCCTCTAGCATATTGGGAGAGATCATGGTGGTACTTCAAGAGCTTGAGAGCATACGTATCAGCGTCCAAAGTGTAGCAGAGAATTTATCGATCCTATTGCCCTTGTCGAGCATATTGAGAGGGAACATGGTGGTACTTCAAGAGGTTGAGCAGACGTATTGGTGTCCAAAGTGTAGCAAAGGATTTATTAATCCTATTGCCCTCGTCGAGCATATTGAGAGGGATCATGGGATACTTCAAGAGCTTGAGCTTTCGTATCGGCATCCAAAGTGTAGCAAAGGATTCATCGATCCTGTTGCCCTCGTCGAGCATATTGAGAGGGATCATGGTGACACTTCAAGAGCTTGA 1080 45.0 MGTPEFPNLGKHCNLEDCKQIDFLPFTCDCCRQVFCLEHRSYNRHSCPKADRRDVTVVICPLCAKGVRLVPDQDPNITWEIHVNTECDPSNYEKVTKKKKCPVPGCRESLTFSNTIKCRDCSVDHCLKHRFGLDHKCPGPKKPEPAGFPFVGVLSRSKQEENGPKKALPNTASSNWTTALLNVASSFKASWKATGNNSNGNGHVEQCPQCSAKFSMVSSLVEHVKKVHESGVNRPGAKKKILLPSSSILGEIMVVLQELESIRISVQSVAENLSILLPLSSILRGNMVVLQEVEQTYWCPKCSKGFINPIALVEHIERDHGILQELELSYRHPKCSKGFIDPVALVEHIERDHGDTSRA 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 802954 805607 - Carg22457-RA Car03g00064 144116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00064 359 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Car03g00064 359 Pfam AN1-like Zinc finger 13 51 IPR000058 GO:0008270
Car03g00064 359 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Car03g00064 359 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Car03g00064 359 ProSitePatterns Zinc finger C2H2 type domain signature. 299 320 IPR013087 -
Car03g00064 359 ProSiteProfiles Zinc finger C2H2 type domain profile. 297 320 IPR013087 -
Car03g00064 359 ProSitePatterns Zinc finger C2H2 type domain signature. 207 228 IPR013087 -
Car03g00064 359 ProSiteProfiles Zinc finger C2H2 type domain profile. 205 228 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00064 Car-Chr3:802954 Car14g00572 Car-Chr14:3108693 7.00E-36 dispersed
Car03g00064 Car-Chr3:802954 Car07g01268 Car-Chr7:7883740 1.56E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3090 PF01428 zf-AN1 9.10E-08 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00064 - - cpep:111803780 444.506