Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car03g00088 | ATGTCTCACCCATGTTCCAACTCATTAGCAAGTGTTCCAAAATTCATCTCCTTCCACCACCATTCCTCCCCATCACAACCATCAAATTCCTCCCCAAATATGTCTCACAATTGCTTCTCGTATCCCTACCCGAGCTCGATCCCGAGCCCGAACCCACCTCCACCGTCATCTCCGCCGCTCCGAGAGGCTCTTCCGCTACTCGGGCTAATGTCTCCTCCCGAGCAGAGACAAGAACAAGAAGAAGACGACGATGATGGAGGTAGCAAAGATGAGAACGCATCGGTGACCGTGGCGTTGCACATAGGGCTACCAAACCCTAGCCCAGCTGAAATAGCTTCCTTGATGTGTGGCTCTTCATCTGAGATTGATCAAGAACATGAGTTTGGACAGTCCACCAAAACCCTAATTAAGGGACAGTATTGGATCCCAACTCCTTCTCAAATCCTCATTGGTCCTACTCAATTCTCTTGCCCTGTTTGCTTCAAAACCTTCAATAGATACAACAACATGCAGATGCACATGTGGGGGCATGGATCACAGTACAGAAAAGGCCCTGAGTCCCTCCGGGGCACGCAGCCAACGGGCATGCTAAGGCTTCCTTGCTACTGCTGCGCCCCGGGGTGCCGCAACAACATCGACCATCCGCGGGCCAAGCCATTGAAAGACTTCAGAACTCTTCAAACACATTACAAGCGCAAGCACGGACTAAAGCCCTTCATGTGCCGAAAGTGTGGCAAAGCGTTCGCCGTGCGTGGCGACTGGCGAACGCACGAGAAGAATTGTGGTAAGCTTTGGTACTGCATTTGTGGCTCAGATTTTAAGCACAAGCGCTCGCTCAAGGACCATGTCAAGGCCTTCGGTAATGACCACGCTGCCTACGGTGGAGGCGGGATCGATGTGTTTGGAGATGAAGATGATGAGCCTGCTTCTGAAGTCGAGCAAGATAACGATGAATGA | 957 | 51.52 | MSHPCSNSLASVPKFISFHHHSSPSQPSNSSPNMSHNCFSYPYPSSIPSPNPPPPSSPPLREALPLLGLMSPPEQRQEQEEDDDDGGSKDENASVTVALHIGLPNPSPAEIASLMCGSSSEIDQEHEFGQSTKTLIKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHVKAFGNDHAAYGGGGIDVFGDEDDEPASEVEQDNDE | 318 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 1119536 | 1121585 | - | Carg28044-RA | Car03g00088 | 144140 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car03g00088 | 318 | MobiDBLite | consensus disorder prediction | 18 | 65 | - | - | |
| Car03g00088 | 318 | MobiDBLite | consensus disorder prediction | 18 | 44 | - | - | |
| Car03g00088 | 318 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 157 | 177 | IPR013087 | - | |
| Car03g00088 | 318 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 155 | 182 | IPR013087 | - | |
| Car03g00088 | 318 | MobiDBLite | consensus disorder prediction | 300 | 318 | - | - | |
| Car03g00088 | 318 | MobiDBLite | consensus disorder prediction | 299 | 318 | - | - | |
| Car03g00088 | 318 | MobiDBLite | consensus disorder prediction | 45 | 61 | - | - | |
| Car03g00088 | 318 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 239 | 259 | IPR013087 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car02g01028 | Car-Chr2:7194320 | Car03g00088 | Car-Chr3:1119536 | 5.19E-127 | dispersed | |
| Car03g00088 | Car-Chr3:1119536 | Car06g00066 | Car-Chr6:433765 | 4.13E-135 | dispersed | |
| Car04g01957 | Car-Chr4:13407527 | Car03g00088 | Car-Chr3:1119536 | 2.93E-106 | transposed | |
| Car05g00797 | Car-Chr5:7054905 | Car03g00088 | Car-Chr3:1119536 | 4.47E-97 | transposed | |
| Car03g00088 | Car-Chr3:1119536 | Car07g01248 | Car-Chr7:7736991 | 7.76E-160 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 3092 | None | None | None | None | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car03g00088 | - | - | bhj:120074233 | 532.717 |