Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car03g00131 | ATGGGATCTTCTGCTGCTGCAATGGGCATGGTTTCCGACTCCAAATTCCATGTTCTTGCCGTCGATGATAGCGTCATCGACCGGAAATTGATTGAAAGGCTCCTCAAAACCTCCTCTTATCAAGTTACTACGGTTGATTCTGGGAGTAAAGCTCTGGAGTTCTTGGGATATGACTCCGGGAATAACTCGATTCCTTCTCTTGCATCTAACCATCATCATCATCATCAGGAAGTGGATGTGAATCTTGTTATTACTGATTACTGTATGCCTGAGATGACTGGCTATGATTTATTGAAGAAGATCAAGGGGTCTAAAGCTCTGAGAAACATTCCCGTTGTGATTATGTCATCTGAGAATGTTCCTGCAAGAATCAATAGATGCTTAGAAGAAGGAGCAGAGGAATTCTTCTTGAAACCTGTCCGACTTTCAGATGTCAACCGGCTTAGACCCCACATGTTGAAAACCAAACTCAAAACATCAGAAGAACAGCCTGATTCAGCAACCCAACCCCAAGCACCAGAGCAGCAACAACATGAACAGCATGAACAACATGAACAACATGAACAAGAACGATTACGATCAATACCGTTGCAGGTTGTCCCGACATCGCTGCAAGATCAAGATCGATTGCTATCCGTTCCACTGCTGCCGACGCTGCCACAAGAGCAAGAACAGTTGCAAATACTCCCACCAACGCCGCCGCAACAATCGAACAACAACAAGAGGAAGGCCATGGAAGATGGACTTTCACCAGATAGAACAAGGCCAAGATACAATGGTATTACCACCATGGTGTAG | 798 | 44.99 | MGSSAAAMGMVSDSKFHVLAVDDSVIDRKLIERLLKTSSYQVTTVDSGSKALEFLGYDSGNNSIPSLASNHHHHHQEVDVNLVITDYCMPEMTGYDLLKKIKGSKALRNIPVVIMSSENVPARINRCLEEGAEEFFLKPVRLSDVNRLRPHMLKTKLKTSEEQPDSATQPQAPEQQQHEQHEQHEQHEQERLRSIPLQVVPTSLQDQDRLLSVPLLPTLPQEQEQLQILPPTPPQQSNNNKRKAMEDGLSPDRTRPRYNGITTMV | 265 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 2281271 | 2283983 | + | Carg27624-RA | Car03g00131 | 144183 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car03g00131 | 265 | MobiDBLite | consensus disorder prediction | 155 | 190 | - | - | |
| Car03g00131 | 265 | ProSiteProfiles | Response regulatory domain profile. | 17 | 153 | IPR001789 | GO:0000160 | |
| Car03g00131 | 265 | Pfam | Response regulator receiver domain | 18 | 144 | IPR001789 | GO:0000160 | |
| Car03g00131 | 265 | MobiDBLite | consensus disorder prediction | 228 | 265 | - | - | |
| Car03g00131 | 265 | MobiDBLite | consensus disorder prediction | 228 | 244 | - | - | |
| Car03g00131 | 265 | MobiDBLite | consensus disorder prediction | 162 | 176 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car03g00131 | Car14g00475 | CCT | |
| Car03g00131 | Car07g01312 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car03g00131 | Car-Chr3:2281271 | Car15g00784 | Car-Chr15:4455898 | 9.62E-70 | dispersed | |
| Car04g01410 | Car-Chr4:8189642 | Car03g00131 | Car-Chr3:2281271 | 1.44E-18 | dispersed | |
| Car04g00094 | Car-Chr4:529756 | Car03g00131 | Car-Chr3:2281271 | 8.31E-51 | transposed | |
| Car04g01409 | Car-Chr4:8188978 | Car03g00131 | Car-Chr3:2281271 | 3.54E-41 | transposed | |
| Car14g00475 | Car-Chr14:2529750 | Car03g00131 | Car-Chr3:2281271 | 2.80E-80 | transposed | |
| Car03g00131 | Car-Chr3:2281271 | Car07g01312 | Car-Chr7:8186531 | 3.39E-117 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 3094 | PF00072 | Response_reg | 7.80E-19 | CL0304 | Car | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car03g00131 | K14492 | - | csv:101220999 | 402.134 |