Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00180 ATGTTGTGGGTCGACAAGTATCGTCCAAAAACCCTAGATCAGATCACAGTTCATCAAGATGTAGCACAGAATCTTAAGAAACTGGTTACCGAGCAGGACTGCCCTCATTTGCTCTTCTTTGGCCCCTCCGGTTCCGGAAAGAAAACCCTAGTCATGGCGCTTATCCGGCAGATGTTTGGAGCAAGTGCGGAGAAGGTGAAGGTGGAGAATAAAACCTGGAAAGTTGATGCTGGAACTAGAAATGTTGAAATAGAGTTAACCACCATATCAAGTACAAACCACGTCGAGCTCACTCCCAGCGATGCAGGTTTCCAAGATAGGTATATTGTTCAAGAGATAATCAAGGATATGGCGAAAAACAGACCCATTGACTCCAAAGGGAAAAGGGGACATAAAGTTTTGGTTCTAAATGACGTTGACAAACTATCCAGAGAAGCACAGCACTCTCTTAGGAGAACGATGGAGAAATATAGCTCGTACTGTAGGTTAATACTTTGCTGCAATAGTTCATCAAGAGTTACTGAAGCAATCCGTTCTCGCTGCCTAAATGTGCGGATAAATGGACCAACAGATGATCAGATTGTCAAGGTACTAGAGTTCATTGGGAAGAAAGAAGGACTGCAACTTCCATCTGGATTTGCTTCCCGCATTGCAGAAAAATCAAACCGGAGTTTGAGGAGAGCTATACTATCATTCGAGACTTGTCGTGTTCAACAGTATCCTTTTGTTAGTAACCAGGCAATACCACCGATGGATTGGGAGGAGTACATCTCTGAGATAGCGTCTGACATAATGAAGGAGCAGAGCCCCAAGAGACTGTACCAGGTTCGTGGGAAGTTATATGAACTACTGGTTAATTGTATTCCACCAGAGATCATATTGAAGAGGCTGCTTTATGAGCTACTCAAGAAATTGGATGCTGAATTAAAGCATGAGGTCTGTCACTGGGCTGCATATTATGTTTTATCTATCAGGGAACTTGAAGCTGAACTCTTAGGGATTTGA 1005 43.18 MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFFGPSGSGKKTLVMALIRQMFGASAEKVKVENKTWKVDAGTRNVEIELTTISSTNHVELTPSDAGFQDRYIVQEIIKDMAKNRPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRCLNVRINGPTDDQIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVSNQAIPPMDWEEYISEIASDIMKEQSPKRLYQVRGKLYELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYVLSIRELEAELLGI 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3080394 3086519 + Carg23675-RA Car03g00180 144232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00180 334 Pfam DNA polymerase III, delta subunit 18 187 - -
Car03g00180 334 CDD AAA 19 181 - -
Car03g00180 334 SMART AAA_5 33 192 IPR003593 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00180 Car-Chr3:3080394 Car07g00423 Car-Chr7:2149019 4.26E-64 dispersed
Car03g00180 Car-Chr3:3080394 Car15g00613 Car-Chr15:3395071 3.20E-28 transposed
Car03g00180 Car-Chr3:3080394 Car04g02301 Car-Chr4:18466410 2.10E-28 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00180 K10756 - csv:101221072 593.578