Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00212 ATGAATGACTTGATGACCAAATCGTTCACAAGCTATGTCGATCTGAAGAAGGCCGCCATGAAAGATATCGACCTCGAAGCCGGTTTAGAAATGGCATCGTCCGCTCCCGGCGACAATGGCGACATGGGTCTCTTTCTCGAGGAGGCCGAGAAGGTGAAAACCGAGATGGGTTCGATTAGAGAGATTTTAGTGAAGCTCCAACAAGCGAATGAAGAGACCAAATCGGCTCATAAACCCGAAACCCTCAAATCGCTTCGGAATACGATCAATGTCGACATTGTAACAGTTCTGAAAAAGGCTCGATCCATCCGATCCCACCTCGAGGAAATGGACCGTGCCAATGCTGCCAAGAAACGTCTCTCGGGTAGTAAAGAGGGCACTGCCATTTACAGAACACGAATTGCGGTGACGAACGGGTTACGAAAGAAGTTAAAGGAGCTGATGATGGAGTTTCAGAGCTTGAGGCAGAGGATGATGACGGAGTATAAGGAGACGGTAGGACGGCGATACTTTACAGTGACGGGGGAGAAGGCGAATGAGGAGGTGATAGAGAGGATAATATCAGATGGCGGGGAAGAGTTTTTGGGGAGGGCGATAAAGGAGCACGGGGAAGGTGGGAAGGTAGCGGTGGCGGAGACGGTGGAGGAGATACAGGACCGACACGGGGCGGCGAAGGAGATAGAGAAGAGCTTGTTGGAGCTGCACCAAGTGTTCTTGGACATGGCGGTGATGGTGGAGGCACAAGGGGAGAAGATGGATAACATAGAACATCATGTGATGAATGCTTCGCAGTATGTTAGGGATGGGACAAAGGAATTGAAGAGTGCTAAGGAATTGCAAAGGAGTAGTAGAAAATGTATGTGTTTGGGGATTTTGCTATTGCTTTTGATTATTTTGGTTGTTGTTGTTCCTATTAGTGTTAGTTTTGGAAGTTCTTGA 939 48.35 MNDLMTKSFTSYVDLKKAAMKDIDLEAGLEMASSAPGDNGDMGLFLEEAEKVKTEMGSIREILVKLQQANEETKSAHKPETLKSLRNTINVDIVTVLKKARSIRSHLEEMDRANAAKKRLSGSKEGTAIYRTRIAVTNGLRKKLKELMMEFQSLRQRMMTEYKETVGRRYFTVTGEKANEEVIERIISDGGEEFLGRAIKEHGEGGKVAVAETVEEIQDRHGAAKEIEKSLLELHQVFLDMAVMVEAQGEKMDNIEHHVMNASQYVRDGTKELKSAKELQRSSRKCMCLGILLLLLIILVVVVPISVSFGSS 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3439074 3440141 - Carg19559-RA Car03g00212 144264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00212 312 Pfam Syntaxin 45 249 IPR006011 GO:0016020
Car03g00212 312 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 214 276 IPR000727 -
Car03g00212 312 ProSitePatterns Syntaxin / epimorphin family signature. 220 260 IPR006012 GO:0005484|GO:0006886|GO:0016020
Car03g00212 312 Pfam SNARE domain 251 302 IPR000727 -
Car03g00212 312 Coils Coil 137 157 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01474 Car-Chr2:9601977 Car03g00212 Car-Chr3:3439074 1.20E-50 dispersed
Car03g00212 Car-Chr3:3439074 Car13g00552 Car-Chr13:7435500 8.80E-97 dispersed
Car03g00212 Car-Chr3:3439074 Car07g01140 Car-Chr7:6851525 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00212 K08486 - csv:101220775 503.442