Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00221 ATGGCAGAATTAGATCAAGAACTTGATCCTCCTCCCTTCTTTCTTTGCCCCATCTCTCTCCAAATCATGAAAGACCCCGTCACGGTCGCTTCCGGCATAACCTATGACCGCAAAAGCATCGAGAAATGGTTGTTTTCAGACGGACACAAGACATGCCCCGTCACACAGGTTGTCTTATCGAGCTTCGACATCACTCCCAACATTACTCTAAGACGAGTCATTCAAGCTTGGTGTACTGTCAATGCTTGCAAGGGCATCGAGAGGATTCCGACACCTAAGCCACCGGTCGATTGTAAACAAGTGGTTCGAATTCTTGCAGATGCCAAGTTGTCTCCGTTCTCGCAACAGAATTGTCTCCGACGACTCCGATCTATTGCAGCGGCGAGTGAATCTAATAAACGTTGCATGGAAGCTGCTGGAGCTGTGGAGTTCTTGGCCGGAATTGTGTGTAATTCCACCAACGTGGAATTCAGCTTAGAAGATTACGCTTACTTGATTGACGACCAGTTGGCGAATTTGGGCGATGAGGCTTTGAGCATTCTTCACAAACTCCAAATCTCCGAATCCGGCCTGAAATTTCTACTCGCCAACAATGGCGGCATCTTCGTCTCAACCTTAACCAAAATCTTGCAAAACGGAACCTATGGCTCCCGAGCATATTCAGTAATGCTTCTAACTTCAATGTTCGAAGTTGCAGATCAGATTCAGATCCTCAGCCTAAACACCGATTTCTTCGTCGAAATCGTCCAAATTCTGAAGGATCAGATCTCGAAACAGGCTTCGAAATCGGCATTGAAACTGCTAATCGGTCTTTGTTCGAGTTCCAGAAACAGAGTTAAGGCGGTCAAAGCCGGTGCGGTTCCGGTTCTGATCGATCTCCTCCTCGATCTCGATTCGTCAGAGAAGCGTTCGTGCGAGATGATTCTCGTGACTCTCGATCTACTCTGCGGCTGCGCCGACGGCAGGGCGGAGGTATTGAATCACGCGGCAGGGATCGCTATTGTGTCGAAGAAGATTCTGAGAGTTTCGACACTCGGAAGCGAAAAGGCCGTCGGAATCTTGTGCTCTATCGCGAGATTCTCGGCGAGTGAAAGCGTCGTCCAGGAAATGATGCGGCTCGGAGTTGTGACGAAGCTCTGTTTTCTGCTTCAGGTCGCCGGCGCCGGAGGCAAAGCGAAGGAGAAAGCGAAAGAGATTCTGAAGCTTCATGGTCGGACATGGCGGAATTCTTCATGTCTGCCTTCGAGTCTGCGATCTTCTTTTCCACATTAG 1272 49.21 MAELDQELDPPPFFLCPISLQIMKDPVTVASGITYDRKSIEKWLFSDGHKTCPVTQVVLSSFDITPNITLRRVIQAWCTVNACKGIERIPTPKPPVDCKQVVRILADAKLSPFSQQNCLRRLRSIAAASESNKRCMEAAGAVEFLAGIVCNSTNVEFSLEDYAYLIDDQLANLGDEALSILHKLQISESGLKFLLANNGGIFVSTLTKILQNGTYGSRAYSVMLLTSMFEVADQIQILSLNTDFFVEIVQILKDQISKQASKSALKLLIGLCSSSRNRVKAVKAGAVPVLIDLLLDLDSSEKRSCEMILVTLDLLCGCADGRAEVLNHAAGIAIVSKKILRVSTLGSEKAVGILCSIARFSASESVVQEMMRLGVVTKLCFLLQVAGAGGKAKEKAKEILKLHGRTWRNSSCLPSSLRSSFPH 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3507165 3509225 - Carg19550-RA Car03g00221 144273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00221 423 ProSiteProfiles U-box domain profile. 9 84 IPR003613 GO:0004842|GO:0016567
Car03g00221 423 Pfam U-box domain 11 79 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00221 Car-Chr3:3507165 Car06g00464 Car-Chr6:2564146 8.76E-151 dispersed
Car03g00221 Car-Chr3:3507165 Car07g01144 Car-Chr7:6877701 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00221 - - cmo:103485961 652.129