Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00275 ATGCCGCCGTTCGACGACAATCCTCCGCCGTTCGACGACAATCCTCCGCCGCGACTCGCCCGCGGCGACTCTTTGCCGGAAGGAATTCTGTTCGGAAAATACGAACTCGGTAAGCTATTAGGATGTGGAGCTTTTGCGAAGGTCTACCATGGCAGAAACGTTCTTACTGGACAGAGCGTCGCGATTAAGATCGTTAACAAACTCAAAGTCCTCAAAGGCGGTTTCAAGGCGCACGTTAAGAGAGAAATCGCTATCATGCGCCGTCTCCGTCATCCGAACGTCGTTCGTCTGTTTGAAGTTCTAGCGACGAAGACGAAGATTTATTTCGTGATGGAGTTTGCGAAAGGAGGAGAGCTCTTTGGTAAAGTTTCCAAGGGACGGTTTAGTGAGAATCTTAGCCGTCGGTATTTTCAGCAGTTAATCACCGCCGTTGGATATTGTCATTCCCAAGGGATTTTTCATCGTGATTTGAAACCGGAGAATCTTCTTCTCGATGATAATTTCGATCTTAGAGTTTCGGATTTTGGACTTAGTGCTCTCACCGATCAGATTCGTCCCGACGGATTGCTTCATACTCTCTGTGGAACTCCGGCTTACGTCGCGCCGGAGATTCTCGCGAAGAAAGGCTACGACGGAGCCAAAATCGACGTCTGGTCCTGCGGGATTATCCTCTATGTTCTTACCACTGGATACCTTCCGTTCAACGATTCGAATTTAATGGCGATGTATCGGAAGATTTACAGAGGCGATTTCCGGTGCCCTAAATGGACCTCGCCAGATCTGCGGCGGTTTCTCTCGAGGCTTCTGGATACGAATCCGGAGACGAGGATTACCGTCGATGAGATACATCAAGATCCGTGGTTCGTGAAGGGATTTCAGGAGGAGAAGCTCCAAATCGAAGATTCCGCTTCAGAGATTTACGGTGATGTAAACAATGCGAAATGTTTGAATGCTTTCGATCTAATTTCCTTCTCACCTGGCTTCGATTTGACTGGATTAATCAACGAAACGGAATTTTCCTCTGGCGTTGAGCGCTTTCTCTCCGCCGAATCGCCGGAGAAGATTATAGTGACGGTTGAGGAAGCTTCGAAGTCGGAGAATGCAGCGGTGGAGAAAAACGGCTGGGGAGCTAAAGTGGAGGGTCTCGACGGCGGGTTCATCGCCGTTATTGATATTTTCCGGCTGACGGAGGAATTAGTGGTGGTTGAGATTAAAAACAGAGTAAGGGAAGTAGATCAAGACGGTCAGATTTGGAAAGATATATTGAGACCTCAACTAGAATGTTTGATCTACCGGTCGGAGTGA 1305 48.35 MPPFDDNPPPFDDNPPPRLARGDSLPEGILFGKYELGKLLGCGAFAKVYHGRNVLTGQSVAIKIVNKLKVLKGGFKAHVKREIAIMRRLRHPNVVRLFEVLATKTKIYFVMEFAKGGELFGKVSKGRFSENLSRRYFQQLITAVGYCHSQGIFHRDLKPENLLLDDNFDLRVSDFGLSALTDQIRPDGLLHTLCGTPAYVAPEILAKKGYDGAKIDVWSCGIILYVLTTGYLPFNDSNLMAMYRKIYRGDFRCPKWTSPDLRRFLSRLLDTNPETRITVDEIHQDPWFVKGFQEEKLQIEDSASEIYGDVNNAKCLNAFDLISFSPGFDLTGLINETEFSSGVERFLSAESPEKIIVTVEEASKSENAAVEKNGWGAKVEGLDGGFIAVIDIFRLTEELVVVEIKNRVREVDQDGQIWKDILRPQLECLIYRSE 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3923870 3925174 + Carg28287-RA Car03g00275 144327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00275 434 Pfam NAF domain 314 372 IPR004041 GO:0007165
Car03g00275 434 ProSitePatterns Protein kinases ATP-binding region signature. 40 63 IPR017441 GO:0005524
Car03g00275 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Car03g00275 434 Pfam Protein kinase domain 34 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car03g00275 434 ProSiteProfiles Protein kinase domain profile. 34 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car03g00275 434 ProSiteProfiles NAF domain profile. 311 335 IPR018451 GO:0007165
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00262 Car-Chr3:3818687 Car03g00275 Car-Chr3:3923870 2.08E-20 dispersed
Car03g00275 Car-Chr3:3923870 Car07g01183 Car-Chr7:7170469 0 dispersed
Car02g00512 Car-Chr2:4003411 Car03g00275 Car-Chr3:3923870 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88711 PF00069 Pkinase 6.00E-71 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00275 - K12761 csv:116403168 791.571