Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00315 ATGGCCACCGCCACCGCCGCCGCAACCTCCTCCTTCATCGGAACACGCCTCGTCGACGTGCGGCCGAGTTCCGCCCGAGTCCAAGCCCGATTCGGATTCGGTAAGAAAAAAGCTCCAGCAAAGAAATCGCCGTCATCGAAGACGATATCCGACCGTCCGCTGTGGTTTCCGGGAGCCAAGGCGCCGGAATGGCTGGACGGAAGCTTGGTCGGCGACTACGGATTCGATCCGTTCGGGCTGGGGAAACCAGCAGAGTATTTGCAGTACGATTTGGATTCGTTGGACCAGAACTTGGCGAAGAATGTGGCGGGAGATATAATCGGGACGAGATTTGAGAGCGCCGACGTGAAATCGACGCCGTTTCAGCCGTACTCGGAGGTTTTTGGATTGCAGAGATTCCGTGAGTGCGAGCTGATCCATGGAAGATGGGCGATGTTGGCCACACTCGGCGCTCTCGCCGTTGAAGGCCTCACTGGTATCACTTGGCAAGACGCCGGAAAGGTAGAATTAGTGGAAGGTTCGTCGTACCTTGGGCAGCCGCTGCCCTTCTCCCTGACCACACTGATCTGGATCGAGGTTCTGATATTGCTGCAAGGAGAGGAGATGGGAAGGCTACTTTTGACTACTCTGGAAGGAAATTTTTATAGTTGCAAACACTGTAAAACTCATCTCGCCCTTCAGAAAGACATAATTTCAAGGACTTTTCATTGCAGGCATGGGAAGGCGTACTTGTTTAATAACATTGTCAATGTCACAGTTGGAGAACTAGAAAAGCGGATGTTGATCACAGGATTGCACACTGTTGTTGACATATTTTGTGTTGGTTGTGGCTCAATTCTTGGTTGGAAATATGAGATTGCACATGACAAATCCCAAAAGTTGAAGGTGTTGGGTCCTGATGGAAACAGCTACTTAGCAAGCCATGATCCGCAGCTTGCAGGAAGCGATGGCGACGATGCTTGA 963 51.51 MATATAAATSSFIGTRLVDVRPSSARVQARFGFGKKKAPAKKSPSSKTISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALAVEGLTGITWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLILLQGEEMGRLLLTTLEGNFYSCKHCKTHLALQKDIISRTFHCRHGKAYLFNNIVNVTVGELEKRMLITGLHTVVDIFCVGCGSILGWKYEIAHDKSQKLKVLGPDGNSYLASHDPQLAGSDGDDA 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4202847 4209575 - Carg19991-RA Car03g00315 144367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00315 320 Pfam Chlorophyll A-B binding protein 61 195 IPR022796 -
Car03g00315 320 ProSiteProfiles Yippee domain profile. 213 310 IPR034751 -
Car03g00315 320 Pfam Yippee zinc-binding/DNA-binding /Mis18, centromere assembly 215 293 IPR004910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00315 Car-Chr3:4202847 Car18g00364 Car-Chr18:2246237 5.48E-36 dispersed
Car15g00140 Car-Chr15:769793 Car03g00315 Car-Chr3:4202847 5.57E-47 wgd
Car03g00315 Car-Chr3:4202847 Car04g02797 Car-Chr4:21400741 2.86E-45 wgd
Car03g00315 Car-Chr3:4202847 Car04g01050 Car-Chr4:6022500 2.97E-47 wgd
Car03g00315 Car-Chr3:4202847 Car07g01031 Car-Chr7:5968924 1.25E-116 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00315 K08915 - csv:101208740 348.206